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SeqSero2
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Serotype Seftenberg Allele Mode #30

Closed whottel closed 3 years ago

whottel commented 4 years ago

I have been comparing some results of SeqSero to SeqSero2 and noticed a consistent discrepancy. All of my samples that were called "Senftenberg or Dessau*" in SeqSero are being called Westhampton by SeqSero2 in allele mode. I also tried out a serotype Seftenberg from the Sequence Read Archive (SRR7907800) and again SeqSero2 allele mode calls this Westhampton. However, when I try all of the same isolates in SeqSero2 k-mer mode then they are called as Seftenberg as expected. From your SeqSero2 article I gather that allele mode should be more accurate, but that does not appear to be the case for this particular sequence type.

LSTUGA commented 4 years ago

Thanks for your feedback. This problem has been fixed the latest SeqSero2 v1.1.0.