Closed tseemann closed 3 years ago
For example:
% seqsero2 --check Using bwa - /home/linuxbrew/.linuxbrew/bin/bwa | Version: 0.7.17-r1188 Using pigz - /home/linuxbrew/.linuxbrew/bin/pigz | pigz 2.4 Using samtools - /home/linuxbrew/.linuxbrew/bin/samtools | Version: 1.9 (using htslib 1.9) Using skesa - /home/linuxbrew/.linuxbrew/bin/skesa | SKESA v.2.3.0 Using spades.py - /home/linuxbrew/.linuxbrew/bin/spades.py | SPAdes v3.13.0
or
ERROR: can not find "samtools" in PATH
For example:
or