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denis-cohen / voteswitchR

Data and Methods for Analyzing Comparative Vote Switching Data
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Error compiling install #1

Open tguerra opened 7 months ago

tguerra commented 7 months ago

Hi Denis,

I encounter a problem when the compilation occurs during the installation of the package voteswitchR after running the install command:

remotes::install_github("denis-cohen/voteswitchR")

Here are the errors reported:

In file included from stanExports_vclogit_l2_type1.cc:5:
./stanExports_vclogit_l2_type1.h:300:26: error: use of undeclared identifier 'nil_index_list'
        assign(Y_flat__, nil_index_list(), context__.vals_r("Y"),
                         ^
./stanExports_vclogit_l2_type1.h:311:46: error: use of undeclared identifier 'nil_index_list'
                cons_list(index_uni(sym1__), nil_index_list())),
                                             ^
./stanExports_vclogit_l2_type1.h:329:26: error: use of undeclared identifier 'nil_index_list'
        assign(X_flat__, nil_index_list(), context__.vals_r("X"),
                         ^
./stanExports_vclogit_l2_type1.h:340:46: error: use of undeclared identifier 'nil_index_list'
                cons_list(index_uni(sym1__), nil_index_list())),
                                             ^
./stanExports_vclogit_l2_type1.h:362:25: error: use of undeclared identifier 'nil_index_list'
      assign(ones_cats, nil_index_list(), rep_vector(1.0, ncat),
                        ^
./stanExports_vclogit_l2_type1.h:371:22: error: use of undeclared identifier 'nil_index_list'
      assign(ones_D, nil_index_list(), rep_vector(1.0, D),
                     ^
./stanExports_vclogit_l2_type1.h:394:27: error: use of undeclared identifier 'nil_index_list'
      assign(X_transpose, nil_index_list(), transpose(X),
                          ^
./stanExports_vclogit_l2_type1.h:405:25: error: use of undeclared identifier 'nil_index_list'
      assign(X_varying, nil_index_list(),
                        ^
./stanExports_vclogit_l2_type1.h:408:44: error: use of undeclared identifier 'nil_index_list'
            cons_list(index_min_max(1, D), nil_index_list())), "X"),
                                           ^
./stanExports_vclogit_l2_type1.h:419:27: error: use of undeclared identifier 'nil_index_list'
      assign(Y_transpose, nil_index_list(), transpose(Y),
                          ^
./stanExports_vclogit_l2_type1.h:436:45: error: use of undeclared identifier 'nil_index_list'
                    cons_list(index_uni(l), nil_index_list())),
                                            ^
./stanExports_vclogit_l2_type1.h:441:41: error: use of undeclared identifier 'nil_index_list'
                cons_list(index_uni(l), nil_index_list())), 1,
                                        ^
./stanExports_vclogit_l2_type1.h:446:41: error: use of undeclared identifier 'nil_index_list'
                cons_list(index_uni(l), nil_index_list())), 0.0,
                                        ^
./stanExports_vclogit_l2_type1.h:452:41: error: use of undeclared identifier 'nil_index_list'
                cons_list(index_uni(l), nil_index_list())), 0,
                                        ^
./stanExports_vclogit_l2_type1.h:511:22: error: unexpected type name 'local_scalar_t__': expected expression
    stan::io::reader<local_scalar_t__> in__(params_r__, params_i__);
                     ^
./stanExports_vclogit_l2_type1.h:511:15: error: no member named 'reader' in namespace 'stan::io'
    stan::io::reader<local_scalar_t__> in__(params_r__, params_i__);
    ~~~~~~~~~~^
./stanExports_vclogit_l2_type1.h:523:51: error: use of undeclared identifier 'nil_index_list'
        assign(beta, cons_list(index_uni(sym1__), nil_index_list()),
                                                  ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
12 warnings and 20 errors generated.
make: *** [stanExports_vclogit_l2_type1.o] Error 1
ERROR: compilation failed for package ‘voteswitchR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/voteswitchR’

I have no problem compiling models with RStan/Cmdstanr/Brms models, so I think my C++ toolchain is correctly installed.

Any ideas? Thanks in advance!

g++ --version
Apple clang version 15.0.0 (clang-1500.3.9.4)
Target: arm64-apple-darwin23.4.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin
─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.3.2 (2023-10-31)
 os       macOS Sonoma 14.4
 system   aarch64, darwin20
 ui       RStudio
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       Europe/Paris
 date     2024-03-08
 rstudio  2023.12.1+402 Ocean Storm (desktop)
 pandoc   NA

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denis-cohen commented 7 months ago

Hi Tristan, thanks for raising this issue, and apologies for the delay -- I was out of office these past two weeks. I will look into this soon!

denis-cohen commented 7 months ago

Hi Tristan,

I have updated the package and recompiled the Stan programs (along with some other updates; see here). In case you still encounter any Stan-related problems upon running remotes::install_github("denis-cohen/voteswitchR"), I suggest you proceed as follows:

  1. Download the voteswitchR repo
  2. Manually delete the contents of the src/ folder
  3. Open voteswitchR.Rproj in RStudio
  4. Install the package locally by running the following in the RStudio Terminal
cd "../"
R CMD INSTALL voteswitchR --preclean

Hope this helps!

Best, Denis