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denisecailab / ezTrack

Free, platform independent, behavior tracking software.
GNU General Public License v3.0
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Problem labelling ROI and pixel distance #74

Closed vlucky312 closed 1 year ago

vlucky312 commented 1 year ago

Hi, I'm currently having issues with labelling the ROI and distance in pixels (cells 6, 7a) in location tracking. I am able to run both cells, but the labels do not display. Any help on this issue would be much appreciated!

Screen Shot 2023-06-12 at 10 44 36 AM Screen Shot 2023-06-12 at 10 44 56 AM

ZachPenn commented 1 year ago

Hi. Thanks for bringing this to my attention. This appears to be an issue with one of ezTrack's package dependencies and will require a modified installation. I have it working again on my computer and should have fresh install instructions in the next couple days. Please reach out if you fail to hear from me in a week.

ZachPenn commented 1 year ago

Could you please install the following environment from the terminal, after removing your current ezTrack environment (conda remove --name ezTrack --all):

conda create -y -n ezTrack -c conda-forge python=3.8 pandas=1.3.2 matplotlib=3.1.1 numpy=1.22.3 opencv=4.5.3 jupyter=1.0.0 holoviews=1.14.5 scipy=1.7.1 scikit-learn=0.24.2 bokeh=2.3.3 jinja2=3.0.3 pyviz_comms=2.1.0 tqdm

Please let me know if this fixes your problem.

vlucky312 commented 1 year ago

Hi, it fixed the problem, thank you for all your help!

ZachPenn commented 1 year ago

Glad to hear it!

JSPinho13 commented 1 year ago

Hi I am facing the same problem. I did the installation as you suggested but when my jupyter opened, in the corner appear python(ipykernel) and not python3 like before.

When i label the ROIs just the first ROI appear labeled. All the other Rois appear without the label in the top. The select two points of known distance, the cell runs but did not open the window to draw the points.

Can you help me?

Best Julia

ZachPenn commented 1 year ago

I would try the latest install instructions that I just posted on the ezTrack wiki. Several similar and recent issues emerged that have been resolved by this (most notably for users of newer macs).

JSPinho13 commented 1 year ago

Hi

Thanks

I installed : conda create -y -n ezTrack -c conda-forge python=3.9.16 jupyter=1.0.0 numpy=1.24 scipy=1.11.1 pandas=2.0.3 opencv=4.7.0 holoviews=1.15.0 bokeh=2.4.0 pyviz_comms=2.1 jinja2=3.1.2 scikit-learn=1.3.0 matplotlib=3.7.2 tqdm=4.65.0

Now problem fixed!

Many thanks Best Julia