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denisekuehnert / bdmm

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data
http://mbe.oxfordjournals.org/content/early/2016/05/20/molbev.msw064
GNU General Public License v3.0
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BEAUti template incompatible with BEAST 2.5 #19

Closed tgvaughan closed 6 years ago

tgvaughan commented 6 years ago

Installing BDMM 0.3.0, selecting the MultiTypeBirthDeath template and loading an example data set fails to add a partition to the partition panel. This also suggests that the tutorial is currently broken.

tgvaughan commented 6 years ago

That PR is only a partial fix. The problem has to do with a change in the MTT MigrationModel class that was introduced in MTT 7, which is the BEAST 2.5-compatible release. This change allows deme names to be logged and allows for the presence of "ghost" demes.

tgvaughan commented 6 years ago

Completed fix in PR #21.