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dentearl / mafTools

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
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Error mafcomprator #8

Closed rezasodaei closed 10 years ago

rezasodaei commented 10 years ago

I have this problem: ~/lib/python/mafTools$ make cd lib && make all make[1]: Entering directory /home/reza/lib/python/mafTools/lib' make[1]: Nothing to be done forall'. make[1]: Leaving directory /home/reza/lib/python/mafTools/lib' cd mafComparator && make all make[1]: Entering directory/home/reza/lib/python/mafTools/mafComparator' fatal: Not a git repository (or any of the parent directories): .git Traceback (most recent call last): File "../lib/createVersionSources.py", line 93, in main() File "../lib/createVersionSources.py", line 86, in main buildBranch = getBranch() File "../lib/createVersionSources.py", line 49, in getBranch branchList = runCommand([GIT, 'branch']).split('\n') File "../lib/createVersionSources.py", line 44, in runCommand mtt.handleReturnCode(p.returncode, cmd) File "/home/reza/lib/python/mafTools/lib/mafToolsTest.py", line 117, in handleReturnCode '%s retcode:%d' %(' '.join(cmd), retcode)) Thanks for any help

dentearl commented 10 years ago

mafTools generally assumes it's been installed as a git repo (like from github). When it complies it embeds the git hash into the program so that the --help messages can show what branch and what commit you build from. The line: fatal: Not a git repository (or any of the parent directories): .git indicates to me that mafTools wasn't installed as a git repo. Try cloning it via github and see if that clears this up!