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dentearl / mafTools

Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
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ERROR: testSonLibKVTokyoCabinet (kvdbTest.TestCase) #9

Closed sjin09 closed 9 years ago

sjin09 commented 9 years ago

Dear Benedict,

I am trying to compile sonLib for mafTools and I have get this one error "ERROR: testSonLibKVTokyoCabinet (kvdbTest.TestCase)"

Traceback (most recent call last): File "/usr/local/lib/python2.7/site-packages/sonLib/kvdbTest.py", line 18, in testSonLibKVTokyoCabinet system("sonLib_kvDatabaseTest --type=tokyocabinet") File "/usr/local/lib/python2.7/site-packages/sonLib/bioio.py", line 184, in system raise RuntimeError("Command: %s exited with non-zero status %i" % (command, sts)) RuntimeError: Command: sonLib_kvDatabaseTest --type=tokyocabinet exited with non-zero status 128

Do I require the TokyoCabinet to run this test? and is it okay to let this error go by for the mafTools? What do you guys recommend?

Yours faithfully, Jin

dentearl commented 9 years ago

You want to open this issue against sonLib. Ben should fix this (if he hasn't already).