deprekate / PHANOTATE

PHANOTATE: a tool to annotate phage genomes.
GNU General Public License v3.0
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Adding a requirements.txt file to ease development #28

Closed linsalrob closed 2 years ago

linsalrob commented 2 years ago

This PR adds a requirements.txt file that contains the required modules.

Steps to use development phanotate:

  1. Fork the git repository to your github account
  2. Clone the forked repository to your working machine (git clone git@github.com:username/PHANOTATE.git)
  3. Create a virtual environment and activate it
    cd PHANOTATE
    virtualenv venv
    source venv/bin/activate
  4. Check the location of your python or pip: which python or which pip
  5. Install the dependencies: pip install -r requirements.txt
  6. Make sure you have tRNAScan-SE in your conda environment (mamba install -c bioconda trnascan-se)