Apply default brain masks if none provided

derekbeaton / MARINeR

A (probably temporary) repository for BrainHack TO 2017 (aka MARINeR)

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Open jennyrieck opened 7 years ago

jennyrieck commented 7 years ago

If the user does not provide a mask, an inclusive brain mask should be applied to reduce data size and eliminate out of brain voxels

jennyrieck commented 7 years ago

[ ] generate inclusive brain mask in MNI space (or use templates provided through AFNI/FSL)
[ ] include masks in standard isotropic spaces (2mm, 3mm, 4mm)
[ ] reslicing of mask to match functional data if different voxel size used