Bootcamp Day 2 grading rubrics

[mfisada]

[Updated 20240911]

DAY 2 MORNING	Exercise	Description	Completion
Q1A	Code present	YES
Q1B	protein_coding genes count correct	YES
Q1C	Discussion of interesting biotype	YES
Q2A	Code and result for identifying gene with most go_ids	YES
Q2B	Code for creating new file sorted by 3rd column	YES
Q2C	Description of results for gene from Q2A	YES
Q3A	Code and result for IG genes per chromosome	YES
Q3B	Code and result for IG pseudogenes per chromosome	YES
Q4A	Description for why grep pseudogene <file> is inefficient	YES
Q4B	More specific code written	YES
Q5	Code to convert GTF into BED file	YES

• Q2: All the concepts in your code are correct, but make sure the new file itself is sorted according to the name_1006 column (i.e., the file should not have to be piped into the sort function after it has already been made). This is a pretty simple fix and can be performed just by rearranging/removing some of the code that you already wrote.

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DAY 2 AFTERNOON	Exercise	Description	Completion
Q1	grep.py completed	YES
	sys.argv indexed	YES
	Text file processed	YES
	Newline characters removed	YES
Q2	gtf2bed.py completed	YES
	Chromosome, start coordinate, stop coordinate printed	YES
	gene_name cleaned up and printed	YES
Q3	tally-fixed.py completed	YES
	Bug 1 fixed	YES
	Bug 2 fixed	YES
	Bug 3 fixed	YES

• Q3: It's cool that you got this done with an else statement. Did you know how to use else from previous coding experience? Did someone else show you how to use it? Did you look it up on your own? Just curious to find out which resources you found helpful.

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[derekhui7]

Matthew, I updated the day2 lunch exercise code regarding Q2B, let me know if it is correct now. In regard for Q3 in afternoon exercise, I did know how to use else in previous coding experience. I was in a math modeling course where the language we used was python.