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dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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Error in step 7 while building vcf file #261

Closed ghost closed 4 years ago

ghost commented 7 years ago

ipyrad [v.0.7.10] Interactive assembly and analysis of RAD-seq data

loading Assembly: LygusMin4 from saved path: ~/ipyrad/Miles/LygusMin4.json establishing parallel connection: host compute node: [8 cores] on COSQP04917YDNR.net.ucf.edu

I've ran my dataset before the newest updates and it worked just fine, but now I am having the following error.

Step 7: Filter and write output files for 23 Samples [####################] 100% filtering loci | 0:00:56
[####################] 100% building loci/stats | 0:00:36
[####################] 100% building alleles | 0:00:38
[################## ] 93% building vcf file | 0:00:47
Encountered an unexpected error (see ./ipyrad_log.txt) Error message is below ------------------------------- ValueError(could not broadcast input array from shape (2) into shape (1)) ValueError(could not broadcast input array from shape (2) into shape (1))

isaacovercast commented 7 years ago

You'll need to rerun steps 5 and 6 if you updated from 0.6.27 -> 0.7, we changed some things in some of the intermediate files that are generated that slightly broke backwards compatibility. Try that and let me know how it goes.

AfterDream commented 6 years ago

I have the same ValueError, and my version is 0.7.27. and I had reruned the steps 4-5-6-7, but the same error occurred

isaacovercast commented 4 years ago

stale. plus i fixed this value error in 0.7.30