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dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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analysis tools update to toytree 0.2 API #349

Open isaacovercast opened 5 years ago

isaacovercast commented 5 years ago

Toytree 0.2 api breaks bpp and tetrad analysis tools. Need to update to reflect the new API. FOr now rolling back to toytree=0.1.27 fixes the problem, but should fix the ipyrad analysis code to reflect the new changes.

"It looks like the toytree API changed recently and we haven't updated ipyrad to reflect this. For now you can do this: conda install -c eaton-lab toytree=0.1.27, to roll back to the previous version of toytree and it'll work. I tested it."

isaacovercast commented 3 years ago

treemix works. The bpp notebook is still broken (https://ipyrad.readthedocs.io/en/latest/API-analysis/cookbook-bpp-species-delimitation.html)