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dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
70 stars 39 forks source link

Update documentation #370

Closed brpark29 closed 4 years ago

brpark29 commented 4 years ago

Hello! I have been happily using iPyrad for a long time, and was wondering if it would be possible to update the documentation. I know there have been some significant re-writes, and would like to get a firmer handle on the changes that have been implemented post v 0.7.xx. Thank you!

isaacovercast commented 4 years ago

Hi Brian, The documentation that is live on the rtd site should be 100% correct for the current version. It's not complete, as there's still some stuff we haven't gotten around to, but it's probably 90% complete. Is there something specific you'd like to have better documented?

On Fri, Nov 8, 2019 at 8:06 PM Brian Park notifications@github.com wrote:

Hello! I have been happily using iPyrad for a long time, and was wondering if it would be possible to update the documentation. I know there have been some significant re-writes, and would like to get a firmer handle on the changes that have been implemented post v 0.7.xx. Thank you!

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brpark29 commented 4 years ago

Ah, got it! I was a bit unsure of the order of operations for when the different tools like bedtools were being used in the reference pipeline, but I dug through the source code and was able to figure it out. Thank you!