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dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
70 stars 39 forks source link

mrbayes install UnsatisfiableError #384

Closed isaacovercast closed 3 years ago

isaacovercast commented 4 years ago

mrbayes will not install in the current configuration. I tested this in both python 2.7 and python 3.6/3.7. In a clean conda env run conda install -c bioconda ipyrad -y, then run conda install -c bioconda mrbayes -y and it will spin for a while and eventually fail to solve the dependency problem. I can get mrbayes to install from another channel (BioBuilds), but when you run mb it complains about libreadline ("mb: error while loading shared libraries: libreadline.so.6: cannot open shared object file: No such file or directory"), ipyrad installs readline 7.0 from the default channel (no readline in bioconda). I tried installing readline 8 by hand from conda-forge, and then installing mrbayes, which works, but then mb segfaults with an Illegal instruction error. What the heck?!?!

isaacovercast commented 4 years ago

If you do this it will install in a clean conda env: conda install -c conda-forge -c bioconda ipyrad mrbayes, but then when you run mb you get:

Illegal instruction (core dumped)
isaacovercast commented 4 years ago

A workaround: sudo apt-get install mrbayes, but this defeats the purpose of conda....

eaton-lab commented 4 years ago

What a pain. It seems the conda-forge install is working on some systems at least.

isaacovercast commented 3 years ago

This works now conda install -c conda-forge -c bioconda ipyrad mrbayes.

isaacovercast commented 1 year ago

Whoops, it's broken again (core dumped):

mrbayes                   3.2.7                h5465cc4_5    bioconda