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dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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can't run ABBA-BABA test in ipyrad #399

Closed Bean061 closed 4 years ago

Bean061 commented 4 years ago

Hi, When I run this command, bb.run(ipyclient), following the tutorial in https://ipyrad.readthedocs.io/en/latest/API-analysis/cookbook-abba-baba.html, the error goes as follows. Looking forward to your reply. Thanks!

[ ] 0% 0:00:04 | calculating D-stats

IPyradError Traceback (most recent call last)

in ----> 1 bb.run(ipyclient) ~/opt/anaconda3/lib/python3.7/site-packages/ipyrad/analysis/baba.py in run(self, ipyclient) 168 An ipyparallel client object to distribute jobs to a cluster. 169 """ --> 170 self.results_table, self.results_boots = batch(self, ipyclient) 171 172 ## skip this for 5-part test results ~/opt/anaconda3/lib/python3.7/site-packages/ipyrad/analysis/baba.py in batch(baba, ipyclient) 402 if not asyncs[job].successful(): 403 raise IPyradError(\ --> 404 " error: {}: {}".format(job, asyncs[job].exception())) 405 ## enter results for successful jobs 406 else: IPyradError: error: 1: IndexError(list index out of range)
isaacovercast commented 4 years ago

What version of ipyrad are you running? If not using the most recent version please update and try again.

isaacovercast commented 4 years ago

I'm assuming updating to the newest version fixed this.