dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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ipyrad conda install version conflicts on windows python3.7 #466

Closed HowcanoeWang closed 2 years ago

HowcanoeWang commented 2 years ago

My Intel PC got the following conflicts, and it even asks to install under python2 environment

(base) >  conda create -n ipyrad python=3.7
(ipyrad) > conda install -c conda-forge -c bioconda ipyrad

Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: /
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed

UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:

Specifications:

  - ipyrad -> python=2.7

Your python: python=3.7

If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.

The following specifications were found to be incompatible with each other:

Package python_abi conflicts for:
python=3.7 -> python_abi[version='*|3.7.*',build=*_cp37m]
Package pip conflicts for:
python=3.7 -> pip
Package sqlite conflicts for:
python=3.7 -> sqlite[version='>=3.25.3,<4.0a0|>=3.26.0,<4.0a0|>=3.27.2,<4.0a0|>=3.28.0,<4.0a0|>=3.29.0,<4.0a0|>=3.30.1,<4.0a0|>=3.31.1,<4.0a0|>=3.32.3,<4.0a0|>=3.33.0,<4.0a0|>=3.34.0,<4.0a0|>=3.36.0,<4.0a0']
Package openssl conflicts for:
python=3.7 -> openssl[version='>=1.1.1a,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1l,<1.1.2a|>=3.0.0,<4.0a0']
Package bwa conflicts for:
ipyrad -> bwa
Package toyplot conflicts for:
ipyrad -> toyplot
Package notebook conflicts for:
ipyrad -> notebook
Package ipyparallel conflicts for:
ipyrad -> ipyparallel[version='>=6.0.2']
Package h5py conflicts for:
ipyrad -> h5py
Package vc conflicts for:
python=3.7 -> vc[version='14.*|>=14,<15.0a0|>=14.1,<15.0a0']
Package zlib conflicts for:
ipyrad -> zlib[version='>=1.2.11,<1.3.0a0']
Package bedtools conflicts for:
ipyrad -> bedtools
Package future conflicts for:
ipyrad -> future
Package cutadapt conflicts for:
ipyrad -> cutadapt
Package muscle conflicts for:
ipyrad -> muscle
Package samtools conflicts for:
ipyrad -> samtools
Package pysam conflicts for:
ipyrad -> pysam[version='>=0.15']
Package numba conflicts for:
ipyrad -> numba[version='>=0.37']
Package numpy conflicts for:
ipyrad -> numpy
Package mpi4py conflicts for:
ipyrad -> mpi4py[version='>=3.0']
Package vsearch conflicts for:
ipyrad -> vsearch[version='>=2.13']
Package pandas conflicts for:
ipyrad -> pandas
Package scipy conflicts for:
ipyrad -> scipy
Package requests conflicts for:
ipyrad -> requests
Package vs2015_runtime conflicts for:
python=3.7 -> vs2015_runtime[version='>=14.16.27012|>=14.16.27012,<15.0a0']
Package pypy3.7 conflicts for:
python=3.7 -> pypy3.7[version='7.3.5.*|7.3.7.*']

Any idea about this?

isaacovercast commented 2 years ago

Hello. Well, windows is not a supported operating system, so it doesn't surprise me greatly to hear this. It looks like a bunch of the dependencies aren't available for python3. I have been told that ipyrad will install on windows subsystem for linux, have you tried this? I believe this works. I am closing this ticket because we don't support windows. You'll need to try WSL or find a linux box. Good luck.

HowcanoeWang commented 2 years ago

Hello. Well, windows is not a supported operating system, so it doesn't surprise me greatly to hear this. It looks like a bunch of the dependencies aren't available for python3. I have been told that ipyrad will install on windows subsystem for linux, have you tried this? I believe this works. I am closing this ticket because we don't support windows. You'll need to try WSL or find a linux box. Good luck.

Yes, I tried on my Win10 Intel WSL2, it still gives the python version error; but it has been successfully installed on another Win11 AMD WSL2.

Thanks for your reply!