ipa.sratools - Replace 'fastq-dump' with 'fasterq-dump'

dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets

http://ipyrad.readthedocs.io

GNU General Public License v3.0

72 stars 40 forks source link

ipa.sratools - Replace 'fastq-dump' with 'fasterq-dump' #482

Open isaacovercast opened 2 years ago

isaacovercast commented 2 years ago

Looks like fastq-dump will be deprecated, and the replacement (fasterq-dump) is better, so we should swap out or at least test for fasterq-dump first and then maybe fall back to fastq-dump if it isn't available.