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dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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ModuleNotFoundError: No module named 'ipyrad' #515

Closed emagallong closed 1 year ago

emagallong commented 1 year ago

Hi! I installed ipyrad step-by-step as suggested, but when I moved to Jupyter Notebook I got this error:

ModuleNotFoundError Traceback (most recent call last) /tmp/ipykernel_422489/30096575.py in ----> 1 import ipyrad as ip

ModuleNotFoundError: No module named 'ipyrad'

What can I do to resolve it?

Thanks in advance ;)

isaacovercast commented 1 year ago

Did you install ipyrad inside a conda environment? Did you run the jupyter notebook server from the same conda environment that you installed ipyrad in?

On Thu, Jun 15, 2023 at 12:50 PM emagallong @.***> wrote:

Hi! I installed ipyrad step-by-step as suggested, but when I moved to Jupyter Notebook I got this error:

ModuleNotFoundError Traceback (most recent call last) /tmp/ipykernel_422489/30096575.py in ----> 1 import ipyrad as ip

ModuleNotFoundError: No module named 'ipyrad'

What can I do to resolve it?

Thanks in advance ;)

— Reply to this email directly, view it on GitHub https://github.com/dereneaton/ipyrad/issues/515, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNSXP56ZLDFCRIY7FS22Z3XLM4N7ANCNFSM6AAAAAAZIECAYM . You are receiving this because you are subscribed to this thread.Message ID: @.***>

isaacovercast commented 1 year ago

This is not really an issue with ipyrad, but more of a help request, which is probably easier to handle on our gitter channel:

https://app.gitter.im/#/room/#dereneaton_ipyrad:gitter.im

If you need more assistance like this please use the gitter channel. Thanks!

emagallong commented 1 year ago

Yes, I installed ipyrad inside a conda environment. I'm not working on a server, I'm on a Linux workstation... I run in Jupyter the command !conda activate ipyrad ... It didn't work.

isaacovercast commented 1 year ago

Yes, you can't change the conda environment of a running jupyter server. You need to kill your notebook server and conda activate ipyrad and then start the notebook server from the proper environment. Good luck!

On Thu, Jun 15, 2023 at 1:24 PM emagallong @.***> wrote:

Yes, I installed ipyrad inside a conda environment. I'm not working on a server, I'm on a Linux workstation... I run in Jupyter the command !conda activate ipyrad ... It didn't work.

— Reply to this email directly, view it on GitHub https://github.com/dereneaton/ipyrad/issues/515#issuecomment-1593465084, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNSXP2KIOIZPFF7BJ7FIWTXLNANRANCNFSM6AAAAAAZIECAYM . You are receiving this because you modified the open/close state.Message ID: @.***>

emagallong commented 1 year ago

Got it! Thank you very much... everything has been solved!

isaacovercast commented 1 year ago

+1 nice!

On Thu, Jun 15, 2023 at 1:54 PM emagallong @.***> wrote:

Got it! Thank you very much... everything has been solved!

— Reply to this email directly, view it on GitHub https://github.com/dereneaton/ipyrad/issues/515#issuecomment-1593500727, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNSXP5EAQ2ORNAWHCTW7PLXLND37ANCNFSM6AAAAAAZIECAYM . You are receiving this because you modified the open/close state.Message ID: @.***>