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dereneaton / ipyrad

Interactive assembly and analysis of RAD-seq data sets
http://ipyrad.readthedocs.io
GNU General Public License v3.0
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Python integer 69530 out of bounds for uint16 #581

Closed amesclir closed 2 weeks ago

amesclir commented 2 weeks ago

Dear Eaton and Overcast,

I got an error in the step7 and it does not generate the output files. Do you know what this might be?

Thanks! Marcial

(base) [aescudero@login3 datura]$ cat ipyrad_datura2.log loading Assembly: datura2 from saved path: /lustre~/radseq/datura/datura2.json

ipyrad [v.0.9.96] Interactive assembly and analysis of RAD-seq data

Parallel connection | nodo1014: 24 cores

Step 6: Clustering/Mapping across samples [####################] 100% 0:00:21 | concatenating bams
[####################] 100% 0:00:08 | fetching regions
[####################] 100% 0:00:16 | building database

Step 7: Filtering and formatting output files [####################] 100% 0:00:12 | applying filters

Encountered an Error. Message: OverflowError: Python integer 69530 out of bounds for uint16 Parallel connection closed. (base) [aescudero@login3 datura]$

isaacovercast commented 2 weeks ago

Hello Marcial, This is fixed in the most recent version of ipyrad, please update and try again and I'm sure it will work. All the best, -isaac

amesclir commented 1 week ago

Yes! I repeated it with newer version and it worked. Thanks!