dereneaton pyrad issues

dereneaton / pyrad

Assembly and analysis of RADseq data sets

GNU General Public License v3.0

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issues

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error when param 29 is empty or is 0,0 in pairddrad

#32 charmichaeld opened 7 years ago
0
Fixing newline formatting in VCF

#31 atcg opened 8 years ago
0
Problem parsing new .loci format

#30 jpuritz opened 8 years ago
0
vcf output file can't be indexed with IGV - malformed header

#29 kubu4 closed 8 years ago
5
pyrad really slow?

#28 Fedster closed 8 years ago
6
Updated MUSCLE download link in README

#27 ernstki closed 8 years ago
0
How to install pyrad without root access?

#26 uloeber opened 8 years ago
2
error when param 28 is empty in pairddrad

#25 dereneaton opened 8 years ago
0
allow minCov parameter to be a proportion

#24 TomaszSuchan opened 8 years ago
0
Fixed a missing '+'

#23 StuntsPT closed 8 years ago
0
I have created a conda package for pyrad that pulls in ALL deps (muscle and vsearch too)

#22 xguse opened 8 years ago
3
pyrad package name collision with a RADIUS client by github user 'wichert'

#21 xguse closed 8 years ago
3
Bump the official release tag to 3.0.6?

#20 xguse closed 9 years ago
1
input spacer for invariable locus in unlinked_snps file

#19 dereneaton opened 9 years ago
0
Reorganize project to allow pip based install

#18 xguse closed 9 years ago
2
pip based install?

#17 xguse closed 9 years ago
1
Added an option to output to gphocs format, very similar to the .loci format

#16 isaacovercast closed 9 years ago
1
Save map matching locus index to consens seq indices

#15 dereneaton closed 8 years ago
1
More info in VCF output

#14 ODiogoSilva closed 8 years ago
9
".loci" files are hell to navigate

#13 StuntsPT closed 9 years ago
5
hyphen in names can cause errors

#12 dereneaton closed 8 years ago
0
Make @ symbol for no cutters compatible with ddRAD setting

#11 dereneaton opened 9 years ago
0
D-stat analysis leaves behind hidden .save files

#10 dereneaton opened 9 years ago
0
error in step 3

#9 TomaszSuchan closed 9 years ago
2
error in step 5

#8 TomaszSuchan closed 9 years ago
1
setting ploidy to 1 should produce haploid structure output

#7 TomaszSuchan closed 9 years ago
1
Enable the use of VSEARCH.

#6 StuntsPT closed 9 years ago
0
Use VSEARCH instead of USEARCH

#5 StuntsPT closed 9 years ago
10
Added a shebang and specified python2.

#4 StuntsPT closed 9 years ago
0
Updated to work with python 2.6, provided "counter" and "ordereddict" ar...

#3 StuntsPT closed 9 years ago
0
pyRAD requires python 2.7 and not 2.5 to work

#2 StuntsPT closed 9 years ago
1
Failure to import loci2mig

#1 StuntsPT closed 9 years ago
4