Non-10X data input - Githubissues

derijkp / scywalker

A program for the analysis of single cell nanopore long read data

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Non-10X data input #6

Open AlmightyPancake1992 opened 5 months ago

AlmightyPancake1992 commented 5 months ago

Hi! Would i be possible for a user to somehow change some parameters/settings so other dataset types could be used instead of 10X? In 10X the barcodes and UMI's are positioned and located as such: 'adapter - barcode - UMI' Could that be adapted to, for example 'index primer sequence - barcode - index primer sequence - TSO - UMI'

Kind regards, AlmightyPancake1992

wdecoster commented 4 months ago

Hi,

Thank you for your interest in scywalker! Changing the adapter/index structure is currently unsupported, primarily because we are working on 10X data at the moment. Which technology do you have in mind that results in the structure you mention?

Best, Wouter