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dermestid / bold-phylodiv-scripts

Scripts to calculate phylodiversity and its distribution from BOLD DNA barcode data.
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Pipe PAUP #70

Closed dermestid closed 3 years ago

dermestid commented 3 years ago

Saving trees to file is fine but probably has a bit of overhead which adds up.

It would be nicer if we could pipe the output of tree building, but I haven't yet figured out how to get PAUP to return its output to console. Maybe it's only an issue on windows?

dermestid commented 3 years ago

I figured it out: paup.cmd, paup4.exe and paup4c.exe are different. paup4.exe is the GUI version; i should be using paup.cmd or paup4c.exe.