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desihub / desiconda

Tools to install DESI dependencies from scratch.
BSD 3-Clause "New" or "Revised" License
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boostrap-desi.sh requires password for desimodel data, which is supposed to be public #75

Open sbailey opened 3 weeks ago

sbailey commented 3 weeks ago

@dmargala reported

while running source scripts/bootstrap-desi.sh, i was prompted for my desi.lbl.gov password during the desimodel install step. Is that necessary?

This is likely arising from trying to access the desimodel data files from svn. Our intension was that desimodel data are public for read-only, but perhaps that is only via a URL and not svn or something like that. Investigate and try to make an install path that doesn't require a desi password.

weaverba137 commented 3 weeks ago

@dmargala Could I please see the full output of the command you were running?

weaverba137 commented 3 weeks ago

PS, if the full output is not available could you please try running

svn ls https://desi.lbl.gov/svn/code/desimodel

at NERSC, in an environment as similar as possible to where you were running source scripts/bootstrap-desi.sh?

dmargala commented 3 weeks ago

Here's the full output:

dmargala@perlmutter:login38:/pscratch/sd/d/dmargala/desihub/desiconda> source scripts/bootstrap-desi.sh
Collecting git+https://github.com/desihub/desiutil.git
  Cloning https://github.com/desihub/desiutil.git to /tmp/pip-req-build-u72owxqq
  Running command git clone --filter=blob:none --quiet https://github.com/desihub/desiutil.git /tmp/pip-req-build-u72owxqq
  Resolved https://github.com/desihub/desiutil.git to commit b834ec451c735cecbf0d9da28014d08319d5c397
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Requirement already satisfied: requests in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from desiutil==3.4.4.dev1122) (2.32.3)
Requirement already satisfied: pyyaml in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from desiutil==3.4.4.dev1122) (6.0.2)
Requirement already satisfied: numpy<2.0 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from desiutil==3.4.4.dev1122) (1.22.4)
Requirement already satisfied: astropy>=5.0 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from desiutil==3.4.4.dev1122) (6.1.0)
Requirement already satisfied: healpy in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from desiutil==3.4.4.dev1122) (1.16.6)
Requirement already satisfied: matplotlib in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from desiutil==3.4.4.dev1122) (3.8.4)
Collecting numpy<2.0 (from desiutil==3.4.4.dev1122)
  Using cached numpy-1.26.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
Requirement already satisfied: pyerfa>=2.0.1.1 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from astropy>=5.0->desiutil==3.4.4.dev1122) (2.0.1.4)
Requirement already satisfied: astropy-iers-data>=0.2024.4.29.0.28.48 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from astropy>=5.0->desiutil==3.4.4.dev1122) (0.2024.11.4.0.33.34)
Requirement already satisfied: packaging>=19.0 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from astropy>=5.0->desiutil==3.4.4.dev1122) (24.1)
Requirement already satisfied: scipy in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from healpy->desiutil==3.4.4.dev1122) (1.8.1)
Requirement already satisfied: contourpy>=1.0.1 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from matplotlib->desiutil==3.4.4.dev1122) (1.2.1)
Requirement already satisfied: cycler>=0.10 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from matplotlib->desiutil==3.4.4.dev1122) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from matplotlib->desiutil==3.4.4.dev1122) (4.54.1)
Requirement already satisfied: kiwisolver>=1.3.1 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from matplotlib->desiutil==3.4.4.dev1122) (1.4.7)
Requirement already satisfied: pillow>=8 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from matplotlib->desiutil==3.4.4.dev1122) (11.0.0)
Requirement already satisfied: pyparsing>=2.3.1 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from matplotlib->desiutil==3.4.4.dev1122) (3.2.0)
Requirement already satisfied: python-dateutil>=2.7 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from matplotlib->desiutil==3.4.4.dev1122) (2.9.0)
Requirement already satisfied: charset-normalizer<4,>=2 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from requests->desiutil==3.4.4.dev1122) (3.4.0)
Requirement already satisfied: idna<4,>=2.5 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from requests->desiutil==3.4.4.dev1122) (3.10)
Requirement already satisfied: urllib3<3,>=1.21.1 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from requests->desiutil==3.4.4.dev1122) (2.2.3)
Requirement already satisfied: certifi>=2017.4.17 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from requests->desiutil==3.4.4.dev1122) (2024.8.30)
Requirement already satisfied: six>=1.5 in /pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib->desiutil==3.4.4.dev1122) (1.16.0)
  Using cached numpy-1.24.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB)
Using cached numpy-1.24.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
Building wheels for collected packages: desiutil
  Building wheel for desiutil (pyproject.toml) ... done
  Created wheel for desiutil: filename=desiutil-3.4.4.dev1122-py3-none-any.whl size=1084949 sha256=ba397506a637e6a280bd4237a9a75e1739e7fe471b3a49b72dfffe0445752e0c
  Stored in directory: /tmp/pip-ephem-wheel-cache-6dt95vv2/wheels/34/09/8b/d13aa456065b087d9abe0f662176febb98d659764200f53d78
Successfully built desiutil
Installing collected packages: numpy, desiutil
  Attempting uninstall: numpy
    Found existing installation: numpy 1.22.4
    Uninstalling numpy-1.22.4:
      Successfully uninstalled numpy-1.22.4
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
galsim 2.6.0 requires setuptools<72,>=38, but you have setuptools 75.1.0 which is incompatible.
scikit-image 0.24.0 requires scipy>=1.9, but you have scipy 1.8.1 which is incompatible.
Successfully installed desiutil-3.4.4.dev1122 numpy-1.24.4
desiInstalling desiutil
DEBUG:install.py:258:get_options:2024-11-06T09:50:59: Set log level to DEBUG.
DEBUG:install.py:327:get_product_version:2024-11-06T09:50:59: Detected GitHub install.
DEBUG:install.py:358:identify_branch:2024-11-06T09:50:59: Using https://github.com/desihub/desiutil.git as the URL of this product.
DEBUG:install.py:438:get_code:2024-11-06T09:51:00: git clone -q -b main https://github.com/desihub/desiutil.git /pscratch/sd/d/dmargala/desihub/desiconda/desiutil-main
DEBUG:install.py:445:get_code:2024-11-06T09:51:01:
DEBUG:install.py:646:start_modules:2024-11-06T09:51:01: Initializing Modules with MODULESHOME=/opt/cray/pe/lmod/lmod.
DEBUG:install.py:545:build_type:2024-11-06T09:51:01: Detected build type: py
DEBUG:install.py:708:install_module:2024-11-06T09:51:01: configure_module(desiutil, main, working_dir=/pscratch/sd/d/dmargala/desihub/desiconda/desiutil-main, dev=True)
DEBUG:install.py:728:install_module:2024-11-06T09:51:01: process_module('/pscratch/sd/d/dmargala/desihub/desiconda/desiutil-main/etc/desiutil.module', self.module_keywords, '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/modulefiles')
DEBUG:install.py:545:build_type:2024-11-06T09:51:01: Detected build type: py
DEBUG:install.py:785:install:2024-11-06T09:51:01: shutil.copytree('/pscratch/sd/d/dmargala/desihub/desiconda/desiutil-main', '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main')
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/etc/desiutil.module', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/t/generic_dependencies.txt', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/t/test.module', 493)
DEBUG:install.py:995:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/t/test_fix_permissions.sh', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/t/SFD_dust_4096_sgp.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/t/SFD_dust_4096_ngp.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/t/qso_gmm.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_install.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_top_level.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/make_testmaps.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_dust.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_redirect.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_plots.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_log.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_svn.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_sklearn.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_io.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_brick.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_stats.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_git.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_modules.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_api.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_timer.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_bitmask.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_funcfits.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_iers.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_annotate.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/__init__.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_setup.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_census.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_names.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/test_depend.py', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/test/t', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/data/census.yaml', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/data/DES_footprint.txt', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/data/Leap_Second.dat', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/data/desiutil.module', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/data/iers_frozen.ecsv', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/depend.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/dust.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/timer.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/git.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/funcfits.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/iers.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/stats.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/bitmask.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/log.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/api.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/setup.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/install.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/io.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/_version.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:02: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desiutil/main/py/desiutil/modules.py', 493)
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DEBUG:install.py:1033:cleanup:2024-11-06T09:51:02: os.chdir('/pscratch/sd/d/dmargala/desihub/desiconda')
DEBUG:install.py:1037:cleanup:2024-11-06T09:51:02: shutil.rmtree('/pscratch/sd/d/dmargala/desihub/desiconda/desiutil-main')
DEBUG:install.py:1071:run:2024-11-06T09:51:02: run() complete.
desiInstalling desitree
DEBUG:install.py:258:get_options:2024-11-06T09:51:04: Set log level to DEBUG.
DEBUG:install.py:327:get_product_version:2024-11-06T09:51:04: Detected GitHub install.
DEBUG:install.py:358:identify_branch:2024-11-06T09:51:04: Using https://github.com/desihub/desitree/archive/0.6.0.tar.gz as the URL of this product.
DEBUG:install.py:646:start_modules:2024-11-06T09:51:05: Initializing Modules with MODULESHOME=/opt/cray/pe/lmod/lmod.
DEBUG:install.py:708:install_module:2024-11-06T09:51:05: configure_module(desitree, 0.6.0, working_dir=/pscratch/sd/d/dmargala/desihub/desiconda/desitree-0.6.0, dev=False)
DEBUG:install.py:728:install_module:2024-11-06T09:51:05: process_module('/pscratch/sd/d/dmargala/desihub/desiconda/desitree-0.6.0/etc/desitree.module', self.module_keywords, '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/modulefiles')
DEBUG:install.py:765:prepare_environment:2024-11-06T09:51:05: module('load', 'desitree/0.6.0')
DEBUG:install.py:785:install:2024-11-06T09:51:05: shutil.copytree('/pscratch/sd/d/dmargala/desihub/desiconda/desitree-0.6.0', '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desitree/0.6.0')
DEBUG:install.py:998:permissions:2024-11-06T09:51:05: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desitree/0.6.0/etc/desitree.module', 365)
DEBUG:install.py:998:permissions:2024-11-06T09:51:05: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desitree/0.6.0/README.rst', 365)
DEBUG:install.py:998:permissions:2024-11-06T09:51:05: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desitree/0.6.0/LICENSE.rst', 365)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:05: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desitree/0.6.0/etc', 1389)
DEBUG:install.py:1006:permissions:2024-11-06T09:51:05: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desitree/0.6.0', 1389)
DEBUG:install.py:1033:cleanup:2024-11-06T09:51:05: os.chdir('/pscratch/sd/d/dmargala/desihub/desiconda')
DEBUG:install.py:1037:cleanup:2024-11-06T09:51:05: shutil.rmtree('/pscratch/sd/d/dmargala/desihub/desiconda/desitree-0.6.0')
DEBUG:install.py:1071:run:2024-11-06T09:51:05: run() complete.
desiInstalling desispec
DEBUG:install.py:258:get_options:2024-11-06T09:51:07: Set log level to DEBUG.
DEBUG:install.py:327:get_product_version:2024-11-06T09:51:07: Detected GitHub install.
DEBUG:install.py:358:identify_branch:2024-11-06T09:51:07: Using https://github.com/desihub/desispec.git as the URL of this product.
DEBUG:install.py:438:get_code:2024-11-06T09:51:08: git clone -q -b main https://github.com/desihub/desispec.git /pscratch/sd/d/dmargala/desihub/desiconda/desispec-main
DEBUG:install.py:445:get_code:2024-11-06T09:51:12:
DEBUG:install.py:646:start_modules:2024-11-06T09:51:12: Initializing Modules with MODULESHOME=/opt/cray/pe/lmod/lmod.
DEBUG:install.py:545:build_type:2024-11-06T09:51:12: Detected build type: py
DEBUG:install.py:708:install_module:2024-11-06T09:51:12: configure_module(desispec, main, working_dir=/pscratch/sd/d/dmargala/desihub/desiconda/desispec-main, dev=True)
DEBUG:install.py:728:install_module:2024-11-06T09:51:12: process_module('/pscratch/sd/d/dmargala/desihub/desiconda/desispec-main/etc/desispec.module', self.module_keywords, '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/modulefiles')
DEBUG:install.py:765:prepare_environment:2024-11-06T09:51:12: module('load', 'desispec/main')
DEBUG:install.py:545:build_type:2024-11-06T09:51:12: Detected build type: py
DEBUG:install.py:785:install:2024-11-06T09:51:12: shutil.copytree('/pscratch/sd/d/dmargala/desihub/desiconda/desispec-main', '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main')
DEBUG:install.py:995:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/mpi4py_multiproc/desi_test_multiprocess', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/mpi4py_multiproc/template', 493)
DEBUG:install.py:995:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/mpi4py_multiproc/gen_slrm.sh', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/mpi4py_multiproc/README', 493)
DEBUG:install.py:995:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/anaconda_integration_test.sh', 493)
DEBUG:install.py:995:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/cron_dailytest.sh', 493)
DEBUG:install.py:995:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/desi_bundle.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/travis_install_specex.sh', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/desi_nersc_pipetest.py', 493)
DEBUG:install.py:995:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/desiInstall_integration_test.sh', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/desi_bundle.spec', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/desispec.module', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/etc/mpi4py_multiproc', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/ql/b0.yaml', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/ql/psf-r0.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/ql/psf-b0.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/ql/r0.yaml', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/ql/z0.yaml', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/ql/psf-z0.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088050/tilepix-546.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088038/tilepix-81099.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088056/tilepix-562.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088045/tilepix-80972.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088042/tilepix-489.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088041/tilepix-516.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088046/tilepix-80972.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088057/tilepix-562.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088047/tilepix-579.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088034/tilepix-501.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088049/tilepix-562.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088044/tilepix-80972.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088055/tilepix-562.json', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088048/tilepix-593.json', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088050', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088038', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088056', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088045', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088042', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088041', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088046', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088057', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088047', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088034', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088049', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088044', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088055', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511/00088048', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc/20210511', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/exposure_tables/202105/exposure_table_20210511.csv', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/exposure_tables/202105', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/tiles-miniprod.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/exposures-miniprod.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/README', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/preproc', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/miniprod/exposure_tables', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/processing_tables/processing_table_daily-20240321.csv', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/processing_tables/processing_table_daily-20240320.csv', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/processing_tables/processing_table_daily-20201206.csv', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/processing_tables/processing_table_daily-20210211.csv', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/processing_tables/processing_table_daily-20210110.csv', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/exposure_tables/202309/exposure_table_20230914.csv', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/exposure_tables/202309/exposure_table_20230913.csv', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/exposure_tables/202111/exposure_table_20211129.csv', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/exposure_tables/202309', 1517)
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DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/ql', 1517)
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DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/processing_tables', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/data/exposure_tables', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/py/desispec/test/test_photo.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/doc/_static/desi_pipe_status_help.inc', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/doc/_static/desi_pipe_go_ex.inc', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/doc/_static/desi_pipe_top_ex.inc', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/doc/tex/fig/dataflow.pdf', 493)
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DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/doc/tex', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/requirements.txt', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/.gitignore', 493)
DEBUG:install.py:995:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/setup.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/.coveragerc', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/MANIFEST.in', 493)
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DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/bin', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/.git', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main/doc', 1517)
DEBUG:install.py:1006:permissions:2024-11-06T09:51:16: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desispec/main', 1517)
DEBUG:install.py:1033:cleanup:2024-11-06T09:51:16: os.chdir('/pscratch/sd/d/dmargala/desihub/desiconda')
DEBUG:install.py:1037:cleanup:2024-11-06T09:51:16: shutil.rmtree('/pscratch/sd/d/dmargala/desihub/desiconda/desispec-main')
DEBUG:install.py:1071:run:2024-11-06T09:51:17: run() complete.
desiInstalling specter
DEBUG:install.py:258:get_options:2024-11-06T09:51:18: Set log level to DEBUG.
DEBUG:install.py:327:get_product_version:2024-11-06T09:51:18: Detected GitHub install.
DEBUG:install.py:358:identify_branch:2024-11-06T09:51:18: Using https://github.com/desihub/specter.git as the URL of this product.
DEBUG:install.py:438:get_code:2024-11-06T09:51:19: git clone -q -b main https://github.com/desihub/specter.git /pscratch/sd/d/dmargala/desihub/desiconda/specter-main
DEBUG:install.py:445:get_code:2024-11-06T09:51:23:
DEBUG:install.py:646:start_modules:2024-11-06T09:51:23: Initializing Modules with MODULESHOME=/opt/cray/pe/lmod/lmod.
DEBUG:install.py:545:build_type:2024-11-06T09:51:23: Detected build type: py
DEBUG:install.py:708:install_module:2024-11-06T09:51:23: configure_module(specter, main, working_dir=/pscratch/sd/d/dmargala/desihub/desiconda/specter-main, dev=True)
DEBUG:install.py:728:install_module:2024-11-06T09:51:23: process_module('/pscratch/sd/d/dmargala/desihub/desiconda/specter-main/etc/specter.module', self.module_keywords, '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/modulefiles')
DEBUG:install.py:765:prepare_environment:2024-11-06T09:51:23: module('load', 'specter/main')
DEBUG:install.py:545:build_type:2024-11-06T09:51:23: Detected build type: py
DEBUG:install.py:785:install:2024-11-06T09:51:23: shutil.copytree('/pscratch/sd/d/dmargala/desihub/desiconda/specter-main', '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main')
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/dev/bigboss/spots2psf.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/dev/bigboss/README.rst', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/dev/boss/spZbestSpectra.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/dev/boss/README.rst', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/dev/DivideAndConquer.ipynb', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/dev/README.rst', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/dev/bigboss', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/dev/boss', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/etc/specter.module', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/psf/gausshermite2.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/psf/psf.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/psf/pixpsf.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/psf/spotgrid.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/psf/__init__.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-008.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-022.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-027.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/psf-spot.fits', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-026.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-007.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-019.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/psf-gausshermite2.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/psf-gausshermite.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-002.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-013.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-023.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-029.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-015.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-014.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-012.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-011.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-006.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-004.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/py/specter/test/t/spec-030.fits', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/datamodel/psf.rst', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/datamodel/output_image.rst', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/api.rst', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/changes.rst', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/conf.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/data_files.rst', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/index.rst', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/nb', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc/datamodel', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/.travis.yml', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/.gitignore', 493)
DEBUG:install.py:995:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/setup.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/.coveragerc', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/MANIFEST.in', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/README.rst', 493)
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DEBUG:install.py:1001:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/bin', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/.git', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main/doc', 1517)
DEBUG:install.py:1006:permissions:2024-11-06T09:51:24: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/specter/main', 1517)
DEBUG:install.py:1033:cleanup:2024-11-06T09:51:24: os.chdir('/pscratch/sd/d/dmargala/desihub/desiconda')
DEBUG:install.py:1037:cleanup:2024-11-06T09:51:24: shutil.rmtree('/pscratch/sd/d/dmargala/desihub/desiconda/specter-main')
DEBUG:install.py:1071:run:2024-11-06T09:51:25: run() complete.
desiInstalling gpu_specter
DEBUG:install.py:258:get_options:2024-11-06T09:51:26: Set log level to DEBUG.
DEBUG:install.py:327:get_product_version:2024-11-06T09:51:26: Detected GitHub install.
DEBUG:install.py:358:identify_branch:2024-11-06T09:51:26: Using https://github.com/desihub/gpu_specter.git as the URL of this product.
DEBUG:install.py:438:get_code:2024-11-06T09:51:27: git clone -q -b main https://github.com/desihub/gpu_specter.git /pscratch/sd/d/dmargala/desihub/desiconda/gpu_specter-main
DEBUG:install.py:445:get_code:2024-11-06T09:51:28:
DEBUG:install.py:646:start_modules:2024-11-06T09:51:28: Initializing Modules with MODULESHOME=/opt/cray/pe/lmod/lmod.
DEBUG:install.py:545:build_type:2024-11-06T09:51:28: Detected build type: py
DEBUG:install.py:708:install_module:2024-11-06T09:51:28: configure_module(gpu_specter, main, working_dir=/pscratch/sd/d/dmargala/desihub/desiconda/gpu_specter-main, dev=True)
DEBUG:install.py:728:install_module:2024-11-06T09:51:28: process_module('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/conda/lib/python3.10/site-packages/desiutil/data/desiutil.module', self.module_keywords, '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/modulefiles')
DEBUG:install.py:765:prepare_environment:2024-11-06T09:51:28: module('load', 'gpu_specter/main')
DEBUG:install.py:545:build_type:2024-11-06T09:51:29: Detected build type: py
DEBUG:install.py:785:install:2024-11-06T09:51:29: shutil.copytree('/pscratch/sd/d/dmargala/desihub/desiconda/gpu_specter-main', '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main')
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/benchmarks/README.md', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/benchmarks/cpu_haswell.sh', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/data/psf-r0-00067784.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/data/psf-r0-00051060.fits', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/test_psfcoeff.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/test_polynomial.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/test_projection_matrix.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/test_spots.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/test_linalg.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/__init__.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test/util.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/extract/cpu.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/extract/both.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/extract/gpu.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/extract/__init__.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/spex.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/core.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/io.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/_version.py', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/__init__.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/mpi.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/util.py', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/test', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter/extract', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py/gpu_specter', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.github/workflows/python-package.yml', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.github/workflows', 1517)
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DEBUG:install.py:995:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/bin/desi_mps_wrapper', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/pre-merge-commit.sample', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/push-to-checkout.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/pre-receive.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/commit-msg.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/update.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/pre-push.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/fsmonitor-watchman.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/pre-commit.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/post-update.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks/pre-applypatch.sample', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/objects/pack/pack-7ef7bc115bc3350ff6b0bb04abe5ab74428d817b.idx', 493)
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DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/objects/pack', 1517)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/refs/heads/main', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/refs/remotes/origin/HEAD', 493)
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DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/logs/refs/heads/main', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/logs/refs/remotes/origin/HEAD', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/logs/refs/remotes/origin', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/logs/refs/heads', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/logs/refs/remotes', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/logs/HEAD', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/logs/refs', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/index', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/packed-refs', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/description', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/HEAD', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/config', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/hooks', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:29: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/objects', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/refs', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/info', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/logs', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git/branches', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/issue/draft.md', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/issue/L.npy', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/issue/endianness.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/issue/coeff.npy', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/proj_matrix_gpu.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/extract_gpu.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/projection_gpu_test.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/extract_compare.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/quick_switch_demo.py', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic/issue', 1517)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/doc/profiling.md', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/doc/changes.md', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/doc/testing.md', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/doc/benchmark.md', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/doc/how-to-build-gpu-conda-env.md', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/nb/compare-specter.ipynb', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/nb/CompareFullExtraction.ipynb', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/nb/Overview.ipynb', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/nb/Explore-3D-Array-Performance.ipynb', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/nb/hackthon_lessons_learned.ipynb', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/nb/ProjectionMatrix.ipynb', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/nb/CompareEx2dPatch.ipynb', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/README.md', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/LICENSE', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/requirements.txt', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.gitignore', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/setup.py', 493)
DEBUG:install.py:998:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/pytest.ini', 493)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/benchmarks', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/etc', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/py', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.github', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/bin', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/.git', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/attic', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/doc', 1517)
DEBUG:install.py:1001:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main/nb', 1517)
DEBUG:install.py:1006:permissions:2024-11-06T09:51:30: os.chmod('/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/gpu_specter/main', 1517)
DEBUG:install.py:1033:cleanup:2024-11-06T09:51:30: os.chdir('/pscratch/sd/d/dmargala/desihub/desiconda')
DEBUG:install.py:1037:cleanup:2024-11-06T09:51:30: shutil.rmtree('/pscratch/sd/d/dmargala/desihub/desiconda/gpu_specter-main')
DEBUG:install.py:1071:run:2024-11-06T09:51:30: run() complete.
desiInstalling desimodel
DEBUG:install.py:258:get_options:2024-11-06T09:51:31: Set log level to DEBUG.
DEBUG:install.py:327:get_product_version:2024-11-06T09:51:31: Detected GitHub install.
DEBUG:install.py:358:identify_branch:2024-11-06T09:51:31: Using https://github.com/desihub/desimodel.git as the URL of this product.
DEBUG:install.py:438:get_code:2024-11-06T09:51:32: git clone -q -b main https://github.com/desihub/desimodel.git /pscratch/sd/d/dmargala/desihub/desiconda/desimodel-main
DEBUG:install.py:445:get_code:2024-11-06T09:51:33:
DEBUG:install.py:646:start_modules:2024-11-06T09:51:33: Initializing Modules with MODULESHOME=/opt/cray/pe/lmod/lmod.
DEBUG:install.py:545:build_type:2024-11-06T09:51:33: Detected build type: py
DEBUG:install.py:708:install_module:2024-11-06T09:51:33: configure_module(desimodel, main, working_dir=/pscratch/sd/d/dmargala/desihub/desiconda/desimodel-main, dev=True)
DEBUG:install.py:728:install_module:2024-11-06T09:51:33: process_module('/pscratch/sd/d/dmargala/desihub/desiconda/desimodel-main/etc/desimodel.module', self.module_keywords, '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/modulefiles')
DEBUG:install.py:765:prepare_environment:2024-11-06T09:51:33: module('load', 'desimodel/main')
DEBUG:install.py:545:build_type:2024-11-06T09:51:33: Detected build type: py
DEBUG:install.py:785:install:2024-11-06T09:51:33: shutil.copytree('/pscratch/sd/d/dmargala/desihub/desiconda/desimodel-main', '/pscratch/sd/d/dmargala/desiconda/20241106-2.0.1.dev/code/desimodel/main')
DEBUG:install.py:904:get_extra:2024-11-06T09:51:34: Detected extra script: /pscratch/sd/d/dmargala/desihub/desiconda/desimodel-main/etc/desimodel_data.sh.
Authentication realm: <https://desi.lbl.gov:443> DESI
Password for 'dmargala'

Here's what I get when I run that svn ls command from the same place:

dmargala@perlmutter:login38:/pscratch/sd/d/dmargala/desihub/desiconda> svn ls https://desi.lbl.gov/svn/code/desimodel
branches/
tags/
trunk/
weaverba137 commented 3 weeks ago

@dmargala, two other commands for you to try:

svn checkout https://desi.lbl.gov/svn/code/desimodel/trunk/data

and 

svn export https://desi.lbl.gov/svn/code/desimodel/tags/0.19.2/data

It is also very important to see the value of ${DESIMODEL_VERSION}. Is it possible for you to run a test that displays that value?

dmargala commented 3 weeks ago

full output

dmargala@perlmutter:login38:/pscratch/sd/d/dmargala/desihub/desiconda> echo ${DESIMODEL_VERSION}

dmargala@perlmutter:login38:/pscratch/sd/d/dmargala/desihub/desiconda> svn checkout https://desi.lbl.gov/svn/code/desimodel/trunk/data
Authentication realm: <https://desi.lbl.gov:443> DESI
Password for 'dmargala': ^Csvn: E200015: The operation was interrupted
dmargala@perlmutter:login38:/pscratch/sd/d/dmargala/desihub/desiconda> svn export https://desi.lbl.gov/svn/code/desimodel/tags/0.19.2/data
svn: E155000: Destination directory exists; please remove the directory or use --force to overwrite
svn: E155000: 'data' already exists
dmargala@perlmutter:login38:/pscratch/sd/d/dmargala/desihub/desiconda> rm -rf data
dmargala@perlmutter:login38:/pscratch/sd/d/dmargala/desihub/desiconda> svn export https://desi.lbl.gov/svn/code/desimodel/tags/0.19.2/data
A    data
A    data/spectra
A    data/spectra/spec-qso-z2.4-rmag22.24.dat
A    data/spectra/sn-spec-lya-20180907-r22.75-t4000-nexp4.dat
A    data/spectra/spec-sky-grey.dat
A    data/spectra/sn-spec-lya-20180907-r19.25-t4000-nexp4.dat
A    data/spectra/spec-qso-z2.4-rmag22.62.dat
A    data/spectra/spec-qso-z1.5-rmag22.81.dat
A    data/spectra/sn-spec-lya-21.75.dat
A    data/spectra/spec-elg-z0.818.dat
A    data/spectra/README.lya
A    data/spectra/spec-elg-o2flux-8e-17.dat
A    data/spectra/sn-spec-lya-19.75.dat
A    data/spectra/sn-spec-lya-g23.25-t4000.dat
A    data/spectra/sn-spec-lrg-z0.8-zmag20.38.dat
A    data/spectra/sn-spec-qso-z1.5-rmag22.24.dat
A    data/spectra/sn-spec-lya-g20.75-t4000.dat
A    data/spectra/sn-spec-lrg-z0.9-zmag20.57.dat
A    data/spectra/sn-spec-qso-z1.5-rmag22.62.dat
A    data/spectra/sn-spec-qso-z2.4-rmag22.81.dat
A    data/spectra/sn-spec-lya-g19.25-t4000.dat
A    data/spectra/sn-spec-lya-g24.75-t4000.dat
A    data/spectra/spec-lrg-z0.7-zmag20.00.dat
A    data/spectra/sn-spec-lya-r22.25-t4000.dat
A    data/spectra/sn-spec-lya-20180907-r20.25-t4000-nexp4.dat
A    data/spectra/spec-qso-z2.4-rmag23.00.dat
A    data/spectra/sn-spec-lya-r23.75-t4000.dat
A    data/spectra/spec-elg-z1.622.dat
A    data/spectra/sn-spec-lya-20180907-r21.75-t4000-nexp4.dat
A    data/spectra/spec-ABmag22.0.dat
A    data/spectra/sn-spec-lya-r19.75-t4000.dat
A    data/spectra/sn-spec-lya-20.75.dat
A    data/spectra/spec-elg-z1.189.dat
A    data/spectra/sn-spec-lya-20180907-r19.75-t4000-nexp4.dat
A    data/spectra/sn-spec-qso-z1.5-rmag23.00.dat
A    data/spectra/sn-spec-lya-g20.25-t4000.dat
A    data/spectra/sn-spec-ABmag22.0.dat
A    data/spectra/sn-spec-lya-g24.25-t4000.dat
A    data/spectra/sn-spec-lya-g21.75-t4000.dat
A    data/spectra/README
A    data/spectra/sn-spec-lya-r23.25-t4000.dat
A    data/spectra/sn-spec-lya-r20.75-t4000.dat
A    data/spectra/sn-spec-lya-20180907-r23.25-t4000-nexp4.dat
A    data/spectra/sn-spec-lya-r19.25-t4000.dat
A    data/spectra/sn-spec-lya-r24.75-t4000.dat
A    data/spectra/sn-spec-lya-20180907-r20.75-t4000-nexp4.dat
A    data/spectra/spec-elg-o2flux-8e-17-medfilt-lineratio113-vdisp70.dat
A    data/spectra/spec-lrg-z0.8-zmag20.38.dat
A    data/spectra/sn-spec-lya-22.25.dat
A    data/spectra/spec-qso-z1.5-rmag22.24.dat
A    data/spectra/spec-lrg-z0.9-zmag20.57.dat
A    data/spectra/spec-qso-z1.5-rmag22.62.dat
A    data/spectra/spec-qso-z2.4-rmag22.81.dat
A    data/spectra/ZenithExtinction-KPNO.dat
A    data/spectra/sn-spec-lya-g21.25-t4000.dat
A    data/spectra/sn-spec-qso-z2.4-rmag22.24.dat
A    data/spectra/sn-spec-qso-z2.4-rmag22.62.dat
A    data/spectra/sn-spec-qso-z1.5-rmag22.81.dat
A    data/spectra/sn-spec-lya-g22.75-t4000.dat
A    data/spectra/sn-spec-elg-z0.818.dat
A    data/spectra/sn-spec-lya-r20.25-t4000.dat
A    data/spectra/sn-spec-lya-r24.25-t4000.dat
A    data/spectra/spec-qso-z1.5-rmag23.00.dat
A    data/spectra/sn-spec-lya-20180907-r22.25-t4000-nexp4.dat
A    data/spectra/sn-spec-lya-r21.75-t4000.dat
A    data/spectra/spec-elg-o2flux-8e-17-medfilt.dat
A    data/spectra/sn-spec-lya-21.25.dat
A    data/spectra/sn-spec-lrg-z0.7-zmag20.00.dat
A    data/spectra/sn-spec-lya-22.75.dat
A    data/spectra/sn-spec-lya-19.25.dat
A    data/spectra/spec-elg-o2flux-8e-17-average-line-ratios.dat
A    data/spectra/sn-spec-qso-z2.4-rmag23.00.dat
A    data/spectra/spec-sky-bright.dat
A    data/spectra/spec-lya.dat
A    data/spectra/sn-spec-lya-g22.25-t4000.dat
A    data/spectra/sn-spec-elg-z1.622.dat
A    data/spectra/sn-spec-lya-g23.75-t4000.dat
A    data/spectra/sn-spec-elg-z1.189.dat
A    data/spectra/sn-spec-lya-r21.25-t4000.dat
A    data/spectra/sn-spec-lya-g19.75-t4000.dat
A    data/spectra/sn-spec-lya-20180907-r21.25-t4000-nexp4.dat
A    data/spectra/sn-spec-lya-r22.75-t4000.dat
A    data/spectra/spec-sky.dat
A    data/spectra/sn-spec-lya-20.25.dat
A    data/inputs
A    data/inputs/throughput
A    data/inputs/throughput/ZenithExtinction-KPNO.fits
A    data/inputs/throughput/raytracing.txt
A    data/specpsf
A    data/specpsf/psf-quicksim-y1.fits
A    data/specpsf/psf-b.fits
A    data/specpsf/psf-r.fits
A    data/specpsf/psf-quicksim-rebin.fits
A    data/specpsf/psf-quicksim.fits
A    data/specpsf/nea
A    data/specpsf/nea/masternea_b9.fits
A    data/specpsf/nea/masternea_r0.fits
A    data/specpsf/nea/masternea_r1.fits
A    data/specpsf/nea/masternea_r2.fits
A    data/specpsf/nea/masternea_r3.fits
A    data/specpsf/nea/masternea_r4.fits
A    data/specpsf/nea/masternea_r5.fits
A    data/specpsf/nea/masternea_r6.fits
A    data/specpsf/nea/masternea_r7.fits
A    data/specpsf/nea/masternea_r8.fits
A    data/specpsf/nea/masternea_z0.fits
A    data/specpsf/nea/README
A    data/specpsf/nea/masternea_r9.fits
A    data/specpsf/nea/masternea_z1.fits
A    data/specpsf/nea/masternea_z2.fits
A    data/specpsf/nea/masternea_z3.fits
A    data/specpsf/nea/masternea_z4.fits
A    data/specpsf/nea/masternea_z5.fits
A    data/specpsf/nea/masternea_z6.fits
A    data/specpsf/nea/masternea_z7.fits
A    data/specpsf/nea/masternea_z8.fits
A    data/specpsf/nea/masternea_b0.fits
A    data/specpsf/nea/masternea_z9.fits
A    data/specpsf/nea/masternea_b1.fits
A    data/specpsf/nea/masternea_b2.fits
A    data/specpsf/nea/masternea_b3.fits
A    data/specpsf/nea/masternea_b4.fits
A    data/specpsf/nea/masternea_b5.fits
A    data/specpsf/nea/masternea_b6.fits
A    data/specpsf/nea/masternea_b7.fits
A    data/specpsf/nea/masternea_b8.fits
A    data/specpsf/psf-z.fits
A    data/focalplane
A    data/focalplane/ci-corners.ecsv
A    data/focalplane/desi-focalplane_2021-01-17T00:00:00.ecsv
A    data/focalplane/desi-focalplane_2024-08-20T04:34:57+00:00.ecsv
A    data/focalplane/desi-focalplane_2024-06-24T17:00:59+00:00.ecsv
A    data/focalplane/desi-focalplane_2021-01-19T00:00:00.ecsv
A    data/focalplane/desi-exclusion_2021-06-25T22:38:59+00:00.json.gz
A    data/focalplane/desi-exclusion_2021-02-22T00:00:00.yaml
A    data/focalplane/desi-exclusion_2021-02-05T00:00:00.yaml
A    data/focalplane/desi-state_2021-09-21T22:43:16+00:00.ecsv
A    data/focalplane/desi-focalplane_2021-06-25T22:38:59+00:00.ecsv
A    data/focalplane/desi-state_2022-09-21T17:00:39+00:00.ecsv
A    data/focalplane/fiberpos-all.ecsv
A    data/focalplane/desi-state_2020-03-06T00:00:00.ecsv
A    data/focalplane/fiberpos-all.fits
A    data/focalplane/desi-exclusion_2024-03-04T17:00:50+00:00.json.gz
A    data/focalplane/desi-exclusion_2024-07-24T17:01:03+00:00.json.gz
A    data/focalplane/desi-exclusion_2021-09-21T22:43:16+00:00.json.gz
A    data/focalplane/fiberpos.png
A    data/focalplane/desi-exclusion_2021-09-21T20:13:59+00:00.json.gz
A    data/focalplane/desi-state_2019-09-16T00:00:00.ecsv
A    data/focalplane/desi-focalplane_2021-09-21T22:43:16+00:00.ecsv
A    data/focalplane/desi-focalplane_2022-09-21T17:00:39+00:00.ecsv
A    data/focalplane/desi-exclusion_2024-06-24T17:00:59+00:00.json.gz
A    data/focalplane/desi-focalplane_2020-03-06T00:00:00.ecsv
A    data/focalplane/desi-state_2024-03-04T17:00:50+00:00.ecsv
A    data/focalplane/desi-exclusion_2024-08-19T20:54:52+00:00.json.gz
A    data/focalplane/desi-state_2021-06-27T20:00:34+00:00.ecsv
A    data/focalplane/exclusions_plus200.conf
A    data/focalplane/rzsn.txt
A    data/focalplane/desi-state_2021-02-22T00:00:00.ecsv
A    data/focalplane/desi-state_2021-02-05T00:00:00.ecsv
A    data/focalplane/desi-focalplane_2019-09-16T00:00:00.ecsv
A    data/focalplane/good_pos_2021-02-20.json
A    data/focalplane/desi-state_2024-08-19T20:54:52+00:00.ecsv
A    data/focalplane/exclusions_default.conf
A    data/focalplane/desi-focalplane_2024-03-04T17:00:50+00:00.ecsv
A    data/focalplane/desi-focalplane_2021-06-27T20:00:34+00:00.ecsv
A    data/focalplane/desi-state_2021-09-19T17:25:39+00:00.ecsv
A    data/focalplane/desi-state_2021-03-17T23:20:01.ecsv
A    data/focalplane/platescale.txt
A    data/focalplane/gfa.ecsv
A    data/focalplane/desi-exclusion_2022-09-21T17:00:39+00:00.json.gz
A    data/focalplane/desi-exclusion_2024-08-20T04:34:57+00:00.json.gz
A    data/focalplane/desi-focalplane_2021-02-22T00:00:00.ecsv
A    data/focalplane/desi-exclusion_2010-01-01T00:00:00.yaml
A    data/focalplane/desi-focalplane_2021-02-05T00:00:00.ecsv
A    data/focalplane/desi-exclusion_2021-03-17T23:20:01.yaml.gz
A    data/focalplane/exclusions_plus100.conf
A    data/focalplane/gen_focalplane.sh
A    data/focalplane/desi-focalplane_2024-08-19T20:54:52+00:00.ecsv
A    data/focalplane/fiberpos.ecsv
A    data/focalplane/desi-state_2024-07-24T17:01:03+00:00.ecsv
A    data/focalplane/desi-exclusion_2021-01-17T00:00:00.yaml
A    data/focalplane/desi-exclusion_2021-09-19T17:25:39+00:00.json.gz
A    data/focalplane/desi-state_2021-09-21T20:13:59+00:00.ecsv
A    data/focalplane/fiberpos.fits
A    data/focalplane/desi-exclusion_2021-01-19T00:00:00.yaml
A    data/focalplane/desi-focalplane_2021-09-19T17:25:39+00:00.ecsv
A    data/focalplane/desi-focalplane_2021-03-17T23:20:01.ecsv
A    data/focalplane/desi-focalplane_2024-07-24T17:01:03+00:00.ecsv
A    data/focalplane/desi-focalplane_2021-09-21T20:13:59+00:00.ecsv
A    data/focalplane/desi-state_2010-01-01T00:00:00.ecsv
A    data/focalplane/desi-exclusion_2020-03-06T00:00:00.yaml
A    data/focalplane/check_reach-2021-02-22T00:00:00.asc
A    data/focalplane/desi-state_2024-08-20T04:34:57+00:00.ecsv
A    data/focalplane/desi-state_2021-01-17T00:00:00.ecsv
A    data/focalplane/desi-state_2024-06-24T17:00:59+00:00.ecsv
A    data/focalplane/desi-state_2021-01-19T00:00:00.ecsv
A    data/focalplane/desi-exclusion_2021-06-27T20:00:34+00:00.json.gz
A    data/focalplane/desi-state_2021-06-25T22:38:59+00:00.ecsv
A    data/focalplane/fiberpos.txt
A    data/focalplane/desi-exclusion_2019-09-16T00:00:00.yaml
A    data/focalplane/desi-focalplane_2010-01-01T00:00:00.ecsv
A    data/footprint
A    data/footprint/desi-tiles.fits
A    data/footprint/ci-tiles-v7.fits
A    data/footprint/desi-healpix-weights.fits
A    data/footprint/desi-tiles.ecsv
A    data/desi.yaml
A    data/sky
A    data/sky/kpnoextinct_lunarmodel.dat
A    data/sky/Vfilt.txt
A    data/sky/solarspec.txt
A    data/tsnr
A    data/tsnr/tsnr-ensemble-gpbbright.fits
A    data/tsnr/tsnr-ensemble-gpbdark.fits
A    data/tsnr/tsnr-ensemble-bgs.fits
A    data/tsnr/README
A    data/tsnr/tsnr-ensemble-gpbbackup.fits
A    data/tsnr/tsnr-ensemble-qso.fits
A    data/tsnr/tsnr-ensemble-lrg.fits
A    data/tsnr/tsnr-ensemble-lya.fits
A    data/tsnr/tsnr-ensemble-elg.fits
A    data/targets
A    data/targets/nz_elg_cdr.dat
A    data/targets/nzr_qso_cut.dat
A    data/targets/nz_elg_fdr.dat
A    data/targets/nz_qso.dat
A    data/targets/nz_elg.dat
A    data/targets/nz_bgs_bright.dat
A    data/targets/nz_bgs.dat
A    data/targets/nz_lrg_cdr.dat
A    data/targets/nz_qso_cut.dat
A    data/targets/nzr_qso_bdt.dat
A    data/targets/nz_lrg.dat
A    data/targets/nzr_qso.dat
A    data/targets/dNdzdg_QSO.dat
A    data/targets/nz_qso_cdr.dat
A    data/targets/nz_qso_bdt.dat
A    data/targets/targets.yaml
A    data/targets/nz_bgs_faint.dat
A    data/throughput
A    data/throughput/thru-z_y1measured.fits
A    data/throughput/sdss_jun2001_z_atm.dat
A    data/throughput/thru-z.fits
A    data/throughput/fiberloss-qso.dat
A    data/throughput/thru-b-rebin.fits
A    data/throughput/DESI-0347_blur.ecsv
A    data/throughput/fiberloss-sky.dat
A    data/throughput/fiberloss-elg.dat
A    data/throughput/thru-b_y1measured.fits
A    data/throughput/thru-b.fits
A    data/throughput/fiberloss-star.dat
A    data/throughput/sdss_jun2001_g_atm.dat
A    data/throughput/sdss_jun2001_i_atm.dat
A    data/throughput/DESI-0347_static_offset_1.fits
A    data/throughput/fiberloss-lrg.dat
A    data/throughput/DESI-0347_static_offset_2.fits
A    data/throughput/DESI-0347_static_offset_3.fits
A    data/throughput/thru-r-rebin.fits
A    data/throughput/thru-r_y1measured.fits
A    data/throughput/DESI-0347_offset.ecsv
A    data/throughput/sdss_jun2001_r_atm.dat
A    data/throughput/thru-r.fits
A    data/throughput/fiberloss-perfect.dat
A    data/throughput/sdss_jun2001_u_atm.dat
A    data/throughput/galsim-fiber-acceptance.fits
A    data/throughput/thru-z-rebin.fits
A    data/weather
A    data/weather/daily-2007-2017.csv
Exported revision 144006.
weaverba137 commented 3 weeks ago

From that I can infer that ${DESIMODEL_VERSION} == "tags/main", so I don't necessarily need that value.

Could you please make /pscratch/sd/d/dmargala/desiconda group-readable by desi?

weaverba137 commented 3 weeks ago

PS, prior to this bug report, have you previously performed a svn checkout from https://desi.lbl.gov/svn/code at all?

dmargala commented 3 weeks ago

I opened up permissions on /pscratch/sd/d/dmargala/desiconda.

I don't think I've performed a svn checkout from https://desi.lbl.gov/svn/code before but it's possible... certainly not any time recently.

weaverba137 commented 3 weeks ago

OK, here's what I think is happening:

  1. The SVN repository requires authentication for checkout from desimodel, even though it is nominally public. I don't know why this is the case.
  2. Everyone who has ever used desiInstall at NERSC, including the desi collaboration account, has already set up the necessary authentication to enable a checkout from anywhere in the repository.
  3. I believe you have not.
  4. So what happens when you attempt a checkout and actually enter your password?
dmargala commented 3 weeks ago

The checkout succeeds when I enter my password.

Also, it doesn't seem like my authentication is cached. I'm prompted for a password again when I try another checkout.

In case I had some wonky subversion settings, I tried moving my ~/.subversion directory but I see the same behavior.

weaverba137 commented 3 weeks ago

OK, you should examine the svn configuration for the desi collaboration account. That should help inform how to set up the cached authentication.

dmargala commented 3 weeks ago

Thanks, I don't actually need cached authentication, just a curious observation.

I think the main issue is that one shouldn't need to authenticate to bootstrap the desi environment.