rncahn
commented
8 years ago Yes, that's what I find, too. But do recall that I did establish that the code gives consistent answers on cori and edison, which is what I set out to investigate.
On Tue, Mar 29, 2016 at 12:59 PM, Yu Feng notifications@github.com wrote:
The main error message is
--15909:0: aspacem Valgrind: FATAL: VG_N_SEGMENTS is too low. --15909:0: aspacem Increase it and rebuild. Exiting now.
The full log is here:
valgrind ../src/fiberassign params_fiberassign.txt ==15909== Memcheck, a memory error detector ==15909== Copyright (C) 2002-2015, and GNU GPL'd, by Julian Seward et al. ==15909== Using Valgrind-3.11.0 and LibVEX; rerun with -h for copyright info ==15909== Command: ../src/fiberassign params_fiberassign.txt ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x433873: printFile(char const*) (misc.cpp:999) ==15909== by 0x40380C: main (fiberassign.cpp:32) ==15909== Targfile mtl-lite.fits SStarsfile stdstars-lite.fits SkyFfile sky-lite.fits Secretfile truth-lite.fits surveyFile default_survey_list.txt tileFile 0.3.1/data/footprint/desi-tiles.par fibFile 0.3.1/data/focalplane/fiberpos.txt outDir /home/yfeng1/source/fiberassign/test/output/
PrintAscii true PrintFits false diagnose true
kind QSOLy-a QSOTracer LRG ELG FakeQSO FakeLRG SS SF type QSO QSO LRG ELG QSO LRG SS SF prio 3400 3400 3200 3000 3400 3200 0 0 priopost 3500 0 3200 0 0 0 0 0 goal 5 5 2 1 5 2 5 5 goalpost 5 1 2 1 1 1 5 5 lastpass 0 0 0 1 0 0 1 1 SS 0 0 0 0 0 0 1 0 SF 0 0 0 0 0 0 0 1 pass_intervals 0 50 100 150 200
Randomize false Pacman false Npass 5 MaxSS 10 MaxSF 40 PlateRadius 1.65 InterPlate 0 Analysis 0 InfDens false
TotalArea 15789.0 invFibArea 700 moduloGal 1 moduloFiber 1
Collision false Exact true AvCollide 3.2 Collide 1.98 NoCollide 7.0 PatrolRad 5.8 NeighborRad 14.05
PlotObsTime false PlotHistLya false PlotDistLya false PlotFreeFibHist false PlotFreeFibTime false PlotSeenDens false PrintGalObs false
MinDec -10. MaxDec 10. MinRa 0. MaxRa 10.
Verif false
read target, SS, SF files at 0.141 s
reading MTL file mtl-lite.fits HDU #2 Binary Table: Keeping 593965 targets within ra/dec ranges reading MTL file stdstars-lite.fits HDU #2 Binary Table: NUMOBS_MORE not found ... setting to 0 PRIORITY not found ... setting to 0 GRAYLAYER not found ... setting to 0 Keeping 27715 targets within ra/dec ranges reading MTL file sky-lite.fits HDU #2 Binary Table: NUMOBS_MORE not found ... setting to 0 PRIORITY not found ... setting to 0 GRAYLAYER not found ... setting to 0 Keeping 277634 targets within ra/dec ranges
... took : 14.9 s
Target size 593965 Standard Star size 621680 Sky Fiber size 899314 ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x403B89: main (fiberassign.cpp:50) ==15909== ==15909== Use of uninitialised value of size 8 ==15909== at 0x403BA7: main (fiberassign.cpp:51) ==15909== ==15909== Use of uninitialised value of size 8 ==15909== at 0x403BC6: main (fiberassign.cpp:51) ==15909== ==15909== Use of uninitialised value of size 8 ==15909== at 0x403BF5: main (fiberassign.cpp:52) ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x403C3E: main (fiberassign.cpp:55) ==15909== ==15909== Use of uninitialised value of size 8 ==15909== at 0x403C58: main (fiberassign.cpp:56) ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x5AF20CB: vfprintf (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF8D28: printf (in /usr/lib64/libc-2.22.so) ==15909== by 0x403C6D: main (fiberassign.cpp:56) ==15909== ==15909== Use of uninitialised value of size 8 ==15909== at 0x5AEE0CB: _itoa_word (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF2610: vfprintf (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF8D28: printf (in /usr/lib64/libc-2.22.so) ==15909== by 0x403C6D: main (fiberassign.cpp:56) ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x5AEE0D5: _itoa_word (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF2610: vfprintf (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF8D28: printf (in /usr/lib64/libc-2.22.so) ==15909== by 0x403C6D: main (fiberassign.cpp:56) ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x5AF268E: vfprintf (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF8D28: printf (in /usr/lib64/libc-2.22.so) ==15909== by 0x403C6D: main (fiberassign.cpp:56) ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x5AF21A1: vfprintf (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF8D28: printf (in /usr/lib64/libc-2.22.so) ==15909== by 0x403C6D: main (fiberassign.cpp:56) ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x5AF2741: vfprintf (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF8D28: printf (in /usr/lib64/libc-2.22.so) ==15909== by 0x403C6D: main (fiberassign.cpp:56) ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x5AF21F3: vfprintf (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF8D28: printf (in /usr/lib64/libc-2.22.so) ==15909== by 0x403C6D: main (fiberassign.cpp:56) ==15909== ==15909== Conditional jump or move depends on uninitialised value(s) ==15909== at 0x5AF222A: vfprintf (in /usr/lib64/libc-2.22.so) ==15909== by 0x5AF8D28: printf (in /usr/lib64/libc-2.22.so) ==15909== by 0x403C6D: main (fiberassign.cpp:56) ==15909== class 0 number 474347 class 1 number 68576 class 2 number 51042
... took : 21.3 s
getting file list number of tiles 10666 ==15909== Warning: set address range perms: large range [0x395db040, 0x747e6840) (undefined) size of P 10666 --15909:0: aspacem Valgrind: FATAL: VG_N_SEGMENTS is too low. --15909:0: aspacem Increase it and rebuild. Exiting now.
— You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub https://github.com/desihub/fiberassign/issues/35
rainwoodman
tskisner
sbailey
The main error message is
The full log is here: