Closed stgzr closed 2 years ago
you can check the files we used in our .types files. I believe the cavity6.mol2 files is what we used for training the segmentation model
Hello @stgzr have you re-run data preparation for a custom data? If yes, please help me.
I am trying to use the instruction to prepare data for training a new classifier. I have stuck in make_types step because I can't find train.txt and test.txt files.
Moreover, I have 4 questions:
I am tried on this pdb.
Thank you very much.
p.s: I have asked in the issue https://github.com/devalab/DeepPocket/issues/26.
Well, since I could not find any code related to this issue, I wonder the details of preprocessing. I guess use the protein and the binding site to mask the ground truth. But which files did you use? Because in the scPDB dataset, there are many files such as protein.mol2, site.mol2, cavity6.mol2, ligand.mol2, etc. I am getting confused.