Fpocket files were created properly but then the program throws an error
Note: All libraries properly installed before running.
/content/DeepPocket/predict.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp
***** POCKET HUNTING BEGINS *****
***** POCKET HUNTING ENDS *****
==============================
*** **Open Babel Warning in PerceiveBondOrders
Failed to kekulize aromatic bonds in OBMol::PerceiveBondOrders** (title is /content/6aah_protein_nowat.pdb)
Traceback (most recent call last):
File "/usr/local/lib/python3.7/tarfile.py", line 187, in nti
n = int(s.strip() or "0", 8)
ValueError: invalid literal for int() with base 8: '\x04ctorch.'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.7/tarfile.py", line 2289, in next
tarinfo = self.tarinfo.fromtarfile(self)
File "/usr/local/lib/python3.7/tarfile.py", line 1095, in fromtarfile
obj = cls.frombuf(buf, tarfile.encoding, tarfile.errors)
File "/usr/local/lib/python3.7/tarfile.py", line 1037, in frombuf
chksum = nti(buf[148:156])
File "/usr/local/lib/python3.7/tarfile.py", line 189, in nti
raise InvalidHeaderError("invalid header")
tarfile.InvalidHeaderError: invalid header
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.7/site-packages/torch/serialization.py", line 555, in _load
return legacy_load(f)
File "/usr/local/lib/python3.7/site-packages/torch/serialization.py", line 466, in legacy_load
with closing(tarfile.open(fileobj=f, mode='r:', format=tarfile.PAX_FORMAT)) as tar, \
File "/usr/local/lib/python3.7/tarfile.py", line 1593, in open
return func(name, filemode, fileobj, **kwargs)
File "/usr/local/lib/python3.7/tarfile.py", line 1623, in taropen
return cls(name, mode, fileobj, **kwargs)
File "/usr/local/lib/python3.7/tarfile.py", line 1486, in __init__
self.firstmember = self.next()
File "/usr/local/lib/python3.7/tarfile.py", line 2301, in next
raise ReadError(str(e))
tarfile.ReadError: invalid header
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/content/DeepPocket/predict.py", line 87, in <module>
class_checkpoint=torch.load(args.class_checkpoint)
File "/usr/local/lib/python3.7/site-packages/torch/serialization.py", line 386, in load
return _load(f, map_location, pickle_module, **pickle_load_args)
File "/usr/local/lib/python3.7/site-packages/torch/serialization.py", line 559, in _load
raise RuntimeError("{} is a zip archive (did you mean to use torch.jit.load()?)".format(f.name))
RuntimeError: /content/gdrive/MyDrive/Colab Notebooks/Ainnocence/DeepPocket/first_model_fold1_best_test_auc_85001.pth.tar is a zip archive (did you mean to use torch.jit.load()?)
Thank you for this valued work.
When I run the code below, I am getting an error.
python predict.py -p 6aah.pdb -c first_model_fold1_best_test_auc_85001.pth.tar -s seg0_best_test_IOU_91.pth.tar -r 3Fpocket files were created properly but then the program throws an error
Note: All libraries properly installed before running.