devalab / DeepPocket

Ligand Binding Site detection using Deep Learning
MIT License
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Pocket Probability #23

Closed drorhunvural closed 1 year ago

drorhunvural commented 1 year ago

image

The content of bary_centers_ranked.types is as follows

3 -5.8872820891631195 2.4274225254193103 16.306759363865474 /content/xxx_nowat.gninatypes 1 -3.399881608822576 0.7210002432695428 11.260844794031787 /content/xxx_nowat.gninatypes 2 4.8732080737995735 -7.189318852006624 6.719965229046755 /content/xxxx_nowat.gninatypes 6 -8.189112907608695 8.49208722826087 8.578613858695654 /content/xxxx_nowat.gninatypes 5 -11.534677691417235 3.978282288738218 31.699375888870517 /content/xxxx_nowat.gninatype

How do you calculate the druggability score for each pocket centre? I'm trying to learn the Pocket Probability calculation

RishalAggarwal commented 1 year ago

I need to write up code for this, will push an update soon, pull request welcome