Open Foly93 opened 1 month ago
thank you for the fix on the initial error, it seems like your second error seems to be related prody/pyparsing compatibility, maybe this would help: https://github.com/prody/ProDy/issues/1856
Hi,
it does work now, with both these issues fixed.
Maybe it is helpful for future users to provide a YAML file for easy python environment setup. I attached my environment YAML file to this message, which creates (a hopefully working) environment via
mamba env create -n DeepPocketEnv -f DeepPocketEnv.yaml
or instead of mamba
, conda
and micromamba
should also work.
Cheers, Luis
OS: Ubuntu 22.04 mamba: 1.5.5 conda: 23.11.0
Hi,
I am trying to use your program to predict binding sites in a protein PDB. when I run
I get the following terminal message:
I have tried to circumvent the TypeError by changing line 106 in predict.py from
fout.write(''.join(confidence_types))
tofout.write(''.join(str(confidence_types)))
, but that only led to yet another more cryptic error after prompting the aforementioned python command:Do you have an idea how to fix these issues?
Cheers Foly