Closed WangLiguo-DP closed 2 years ago
Hey,
Could you share the PDB file to reproduce the error
OK,I used 1ALB_A in RCSB PDB, but I couldn't upload this pdb file in github issu, so upload the txt file instead 1alb_A.txt
Hey sorry, it was a busy week. However, I am not able to reproduce the error, my best guess is that your environment may not be set for it. If you just want the output files on this protein I have uploaded them here: https://drive.google.com/drive/folders/1G8-0Apxn7NEs7pnV0FPvUmQzY4s0vF4h?usp=sharing
Hello @WangLiguo-DP have you re-run data preparation for a custom data? If yes, please help me.
I am trying to use the instruction to prepare data for training a new classifier. I have stuck in make_types step because I can't find train.txt and test.txt files.
Moreover, I have 4 questions:
I am tried on this pdb.
Thank you very much.
p.s: I have asked in the issue https://github.com/devalab/DeepPocket/issues/26.
when predicting binding sites given a .pdb file of a protein using: python predict.py -p pdb/1alb_A.pdb -c first_model_fold1_best_test_auc_85001.pth.tar -s seg0_best_test_IOU_91.pth.tar -r 3
I meet this bug : 'segmentation fault' after POCKET HUNTING BEGINS POCKET HUNTING ENDS
I used gdb to view the core file : 'Failed to read a valid object file image from memory. Core was generated by `python3 predict.py -p pdb/1alb_A.pdb -c first_model_fold1_best_test_auc_85001.p'. Program terminated with signal 11, Segmentation fault.'