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deweylab
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CellO
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
MIT License
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Bump scipy from 1.3.1 to 1.10.0
#30
dependabot[bot]
opened
1 year ago
0
fix resource download URL
#29
carsten-jahn
closed
1 year ago
1
Error when install CellO
#28
Chrisdoan9
opened
2 years ago
11
sparsematrix toarray in cello.py
#27
brainfo
closed
2 years ago
2
support layer selection for anndata
#26
brainfo
opened
2 years ago
0
ValueError: Unable to determine gene collection
#25
tingxie2020
opened
2 years ago
4
Bump numpy from 1.17.1 to 1.22.0
#24
dependabot[bot]
opened
2 years ago
0
Understanding assignment of most specific cell type
#23
LustigePerson
opened
2 years ago
0
Optionally return graph object from cello_probs
#22
LustigePerson
closed
2 years ago
3
Error after not finding pre-training models (ir.dill)
#21
ivandatasci
opened
2 years ago
3
Error when Transforming with PCA...
#20
ScreachingFire
closed
1 year ago
4
A little advice
#19
libmelo
opened
2 years ago
2
add fix for no specific label
#18
Jon-bioinfo
opened
2 years ago
1
Could you provide a ftp link to the CellO resources?
#17
brainfo
closed
2 years ago
2
Fix bug: _combine_by_cluster
#16
Ann-Holmes
closed
2 years ago
0
annotation for other species
#15
wangjiawen2013
closed
2 years ago
1
KeyError: 'leiden' when setting the parameter clust_key
#14
andreassteffen
closed
2 years ago
4
KeyError in scanpy_cello(); most specific cell type not created
#13
phjanssen
opened
2 years ago
2
Erroneous assignments on 10k PBMC from 10x
#12
apredeus
closed
2 years ago
4
About the PCA loadings matrix U
#11
Mingjiang-git
closed
3 years ago
6
About preprocessor of PCA in pre-train
#10
Mingjiang-git
closed
3 years ago
3
why every cluster is predicted as "oxygen accumulating cell (CL:0000329)"?
#9
hurleyLi
closed
2 years ago
3
loop of ufunc does not support argument 0
#8
mbcouger
closed
2 years ago
7
PCA Error
#7
mbcouger
closed
3 years ago
4
resources are downloaded even if -f specified
#6
Jon-bioinfo
closed
3 years ago
3
InvalidIndexError: Reindexing only valid with uniquely valued Index objects
#5
akk01
closed
3 years ago
3
no output files
#4
leeyoyohku
closed
2 years ago
2
FileNotFoundError: CellO/resources/trained_models/clr.10x_genes_thresholds.tsv' does not exist
#3
shinthor
closed
3 years ago
1
"else" is missing
#2
ramonvidal
closed
4 years ago
1
NameError: name 'options' is not defined
#1
ramonvidal
closed
4 years ago
1