deweylab / RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
http://deweylab.biostat.wisc.edu/rsem/
GNU General Public License v3.0
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Extra "}" in `rsem-prepare-reference` #132

Closed kmnip closed 4 years ago

kmnip commented 4 years ago

I got an error when running rsem-prepare-reference for the new version 1.3.3:

$ ./rsem-prepare-reference --help
Global symbol "$star_limit_ram" requires explicit package name at ./rsem-prepare-reference line 195.
Unmatched right curly bracket at ./rsem-prepare-reference line 198, at end of line
syntax error at ./rsem-prepare-reference line 198, near "}"
syntax error at ./rsem-prepare-reference line 206, near "}"
syntax error at ./rsem-prepare-reference line 244, near "}"
Execution of ./rsem-prepare-reference aborted due to compilation errors.

It turns out there is an extra } on line 196, ie.

$ diff rsem-prepare-reference2 rsem-prepare-reference
196c196
<     
---
>     }
bli25 commented 4 years ago

@kmnip Fixed. Please try to download it again.