Closed lvweiming closed 2 years ago
Downloaded the package and compile without issues, all the system requirement are met. what could be the reason when using
rsem-prepare-reference --gff3 virus.gff \ --gff3-genes-as-transcripts \ --bowtie \ virus.genome.fa \ ref/virus or rsem-gff3-to-gtf --gff3-genes-as-transcripts
both commands would not run and return --gff3-genes-as-transcripts and --gff3-genes-as-transcripts not found.
check with the command help, these options are not in the list. But I can see it in the source codes.
Downloaded the package and compile without issues, all the system requirement are met. what could be the reason when using
rsem-prepare-reference --gff3 virus.gff \ --gff3-genes-as-transcripts \ --bowtie \ virus.genome.fa \ ref/virus or rsem-gff3-to-gtf --gff3-genes-as-transcripts
both commands would not run and return --gff3-genes-as-transcripts and --gff3-genes-as-transcripts not found.
check with the command help, these options are not in the list. But I can see it in the source codes.