RSEM can not recognize reference sequence name

deweylab / RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

http://deweylab.biostat.wisc.edu/rsem/

GNU General Public License v3.0

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RSEM can not recognize reference sequence name #184

Closed brianpenghe closed 2 years ago

brianpenghe commented 2 years ago

I was running rsem-calculate-expression and got this error in the .err

RSEM can not recognize reference sequence name FBtr0475186!

brianpenghe commented 2 years ago

The reason was: I used a newer version of Rsem to build rsem index but used an older version to run rsem-calculate-expression. When using the newer version to re-run it worked!