"make" error on mac (log attached)

[thisisamirv]

log.txt

I get the above errors while trying to make on mac. Please can anyone help?

[sehe]

It seems that the -std=c++98 flag is not supported by the boost version included (1.55.0).

In fact the whole RSEM code base seems to be c++11 ready except for a few implicit conversions of std::istream to bool. A trivial patch like this will allow you to use -std=c++11 instead:

diff --git a/PairedEndHit.h b/PairedEndHit.h
index be3ea54..0bbf236 100644
--- a/PairedEndHit.h
+++ b/PairedEndHit.h
@@ -26,7 +26,7 @@ private:

 bool PairedEndHit::read(std::istream& in) {
    conprb = 0.0;
-    return (in>>sid>>pos>>insertL);
+    return !!(in>>sid>>pos>>insertL);
 }

 void PairedEndHit::write(std::ostream& out) {
diff --git a/SingleHit.h b/SingleHit.h
index b157a15..f3c2d12 100644
--- a/SingleHit.h
+++ b/SingleHit.h
@@ -43,7 +43,7 @@ protected:

 bool SingleHit::read(std::istream& in) {
    conprb = 0.0;
-   return (in>>sid>>pos);
+   return bool(in>>sid>>pos);
 }

 void SingleHit::write(std::ostream& out) {
diff --git a/buildReadIndex.cpp b/buildReadIndex.cpp
index 3837079..4f58022 100644
--- a/buildReadIndex.cpp
+++ b/buildReadIndex.cpp
@@ -37,15 +37,15 @@ void buildIndex(char* readF, int gap, bool hasQ) {
        streampos pos = fin.tellg();
        success = true;

-       success = (getline(fin, line));
+        success = !!getline(fin, line);
        if (!success) continue;
-       success = (getline(fin, line));
+        success = !!getline(fin, line);
        if (!success) continue;

        if (hasQ) {
-           success = (getline(fin, line));
+           success = !!getline(fin, line);
            if (!success) continue;
-           success = (getline(fin, line));
+           success = !!getline(fin, line);
            if (!success) continue;
        }

Otherwise you could find out how to make sure set BOOST_NO_CXX11_HDR_TUPLE correctly for your platform (in which case Boost Tuple would be used). I don't have access to your compiler to test.