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deweylab / RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
http://deweylab.biostat.wisc.edu/rsem/
GNU General Public License v3.0
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RSEM cannot calculate credibility intervals on Debian 7.8 #45

Closed emi80 closed 7 years ago

emi80 commented 7 years ago

Hi, I am using RSEM 1.2.21. When running it on a Debian Wheezy 7.8 installation it looks like the ci bounds could not be computed. I get the following output in the .genes.results file:

FBgn0002521 FBtr0089204,FBtr0089205 2159.00 1976.37 14.00   17047.35    8586.31 14.00   0.00    12983.33    6862.00 6937.52 19666.4 -1e+30  1e+30

When running the same command with the same data on Debian Jessie 8.6 or Centos 6.7 it seems to work:

FBgn0002521 FBtr0089204,FBtr0089205 2159.00 1976.37 14.00   17047.35    8586.31 14.00   0.00    12983.33    6862.00 6937.52 19666.4 3647.78 10230.2

I tried with different versions of RSEM but the problems still remains.

Do you have any idea about what this could be related to?

Thanks

bli25wisc commented 7 years ago

@emi80 Sorry I'm not sure why it happens... Have you tried RSEM v 1.3.0?