make ebseq fails to make

deweylab / RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

http://deweylab.biostat.wisc.edu/rsem/

GNU General Public License v3.0

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make ebseq fails to make #52

Open lachlansimpson opened 7 years ago

lachlansimpson commented 7 years ago

Readme states:

To compile EBSeq, which is included in the RSEM package, run make ebseq

What I see:

[root@vmpr-res-head-node RSEM-1.3.0]# make ebseq
cd EBSeq && make all
make[1]: Entering directory `/config/packages/rsem/RSEM-1.3.0/EBSeq'
./install
/usr/bin/env: Rscript: No such file or directory
make[1]: *** [EBSeq] Error 127
make[1]: Leaving directory `/config/packages/rsem/RSEM-1.3.0/EBSeq'
make: *** [ebseq] Error 2

I'm running CentOS 7.3, Make 3.82

hmontenegro commented 7 years ago

Do you have R installed?

lachlansimpson commented 7 years ago

Yep, but I didn't have the module loaded. Loading the R module made it work, although we run a managed environment, so I can't say I'm over the moon that all "make ebseq" seems to do is install the ebseq package in R. You could put that in the install notes?

hmontenegro commented 7 years ago

Oh, I am just a user, sorry if I made you believe otherwise. I only commented because I had the same problem in the past.