Open DarioS opened 7 years ago
If a GTF file is accidentally overwritten on disk with tabs converted to spaces, rsem complains about the strand being incorrect.
$ rsem-prepare-reference --gtf genes.gtf --bowtie2 genome.fasta testRef rsem-extract-reference-transcripts testRef 0 genes.gtf None 0 genome.fasta The GTF file might be corrupted! Stop at line : s1 None gene 2 21 . + . gene_id "testGene"; gene_name "XXX"; Error Message: Strand is neither '+' nor '-'! "rsem-extract-reference-transcripts testRef 0 genes.gtf None 0 genome.fasta" failed! Plase check if you provide correct parameters/options for the pipeline!
Could this error message be corrected to highlight the lack of tabs?
If a GTF file is accidentally overwritten on disk with tabs converted to spaces, rsem complains about the strand being incorrect.
Could this error message be corrected to highlight the lack of tabs?