It'd be great if the software could output the percentage of transcript bases covered by the assigned RNA-seq reads. For some genes, these values are not close to 100%, which suggests that the transcript isoforms in the database are incomplete for that gene and that the expected counts should be carefully considered. Having such a number automatically output by RSEM would be convenient rather than having to read and process the short reads yet another time.
It'd be great if the software could output the percentage of transcript bases covered by the assigned RNA-seq reads. For some genes, these values are not close to 100%, which suggests that the transcript isoforms in the database are incomplete for that gene and that the expected counts should be carefully considered. Having such a number automatically output by RSEM would be convenient rather than having to read and process the short reads yet another time.