search

deweylab / RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
http://deweylab.biostat.wisc.edu/rsem/
GNU General Public License v3.0
404 stars 117 forks source link

Allow User Specification of stat Folder Location #68

Open DarioS opened 7 years ago

DarioS commented 7 years ago

Currently, it's always placed in the user's home directory. On the university's server, this has a disk quota of 4 GB and RSEM fails after processing the first sample with the error Fail to create folder S2.stat because the hard quota is reached. There should be an option similar to --temporary-folder which the user can use to change this to another directory.

Disk quotas for user dario (uid 3509): 
Filesystem             blocks   quota   limit   grace   files   quota   limit   grace
como:/users          7995692* 4000000 8000000   7days   60751  500000 1000000 
como:/nobackup     218279232  250000000 350000000       53005  500000 1000000