can rsem-gff3-to-gtf NOT stop when some warning/error in refseq gff?

deweylab / RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

http://deweylab.biostat.wisc.edu/rsem/

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can rsem-gff3-to-gtf NOT stop when some warning/error in refseq gff? #69

Open wangyugui opened 7 years ago

wangyugui commented 7 years ago

Hi.

Can we let rsem-gff3-to-gtf continue to process when some error/warning in refseq gff?

# rsem-gff3-to-gtf GCF_000836905.1_ViralProj14035_genomic.gff /dev/null
Line 192 does not have attribute Parent:
NC_001895.1     RefSeq  primary_transcript      24008   24288   .       +       .       ID=id97;Note=putative;gbkey=prim_transcript
# echo $?
255

GCF_000836905.1_ViralProj14035_genomic.gff.zip