Open Lucas-Maciel opened 6 years ago
Hi, I have been trying to perform a RNASeq analyze but I found this problem.
rsem-prepare-reference --gtf file.gtf Schisto-genoma.fasta references rsem-extract-reference-transcripts references 0 agoravai.gtf None 0 Schisto-genoma.fasta The GTF file might be corrupted! Stop at line : Chr_1 VerjoLab exon 11159 11220 . + . gene_id "Smp_186980"; transcript_id "Smp_186980" "rsem-extract-reference-transcripts references 0 file.gtf None 0 Schisto-genoma.fasta" failed! Plase check if you provide correct parameters/options for the pipeline!
Any ideas of what is wrong? Thank you
Hi, I have been trying to perform a RNASeq analyze but I found this problem.
rsem-prepare-reference --gtf file.gtf Schisto-genoma.fasta references rsem-extract-reference-transcripts references 0 agoravai.gtf None 0 Schisto-genoma.fasta The GTF file might be corrupted! Stop at line : Chr_1 VerjoLab exon 11159 11220 . + . gene_id "Smp_186980"; transcript_id "Smp_186980" "rsem-extract-reference-transcripts references 0 file.gtf None 0 Schisto-genoma.fasta" failed! Plase check if you provide correct parameters/options for the pipeline!
Any ideas of what is wrong? Thank you