Sample Processing Flowcell 04.21_V7 - Githubissues

deyazoubi / spike

NGS pipeline for SNV detection in tumor context based on Nextseq Raw data

BSD 3-Clause "New" or "Revised" License

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Sample Processing Flowcell 04.21_V7 #19

Open deyazoubi opened 3 years ago

deyazoubi commented 3 years ago

a list of open and closed To-Dos: 210420_NB552271_0038_AHW2MJBGXH

[x] Transfer raw data to HPC
[x] md5dum
[x] check NAS space capacity
[x] backup
[x] Fastqc
[x] Qualimap
[ ] create samplesheet and push to github
[ ] inform wetlab to delete data on instrument
[x] inform analysts about demux quality
[ ] delete data from pipeline server
[ ] upload to Snupy
[ ] inform analysts about data upload to Snupy and send status_update

210428_NB552271_0039_AHVK37BGXH

[x] Transfer raw data to HPC
[x] md5dum
[x] check NAS space capacity
[x] backup
[x] Fastqc
[x] Qualimap
[ ] create samplesheet and push to github
[ ] inform wetlab to delete data on instrument
[x] inform analysts about demux quality
[ ] delete data from pipeline server
[ ] upload to Snupy
[ ] inform analysts about data upload to Snupy and send status_update

deyazoubi commented 3 years ago

210420_NB552271_0038_AHW2MJBGXH the coverage is low (run is not good) see the other V7_runs with the same samples (same problem) 201118_NB552271_0025_AHNJL7BGXG 210202_NB552271_0028_AH7NT2BGXH