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deyazoubi / spike

NGS pipeline for SNV detection in tumor context based on Nextseq Raw data
BSD 3-Clause "New" or "Revised" License
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First Nextseq Run 28.11.2019 #3

Open deyazoubi opened 4 years ago

deyazoubi commented 4 years ago

a list of open and closed To-Dos:

  1. 191128NB5522710003_AHHY3NBGXC
    • [x] Transfer raw data to HPC
    • [x] check NAS space capacity
    • [x] backup
    • [ ] create samplesheet and push to github
    • [ ] inform wetlab to delete data on instrument
    • [x] inform analysts about demux quality
    • [x] delete data from pipeline server
    • [x] upload to Snupy
    • [x] inform analysts about data upload to Snupy and send status_update Branch name Nextseq550