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dezeraecox / ProteomicsUtils

A collection of utility functions for processing, analysing and plotting proteomic data
MIT License
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Quant_data functionality #4

Open dezeraecox opened 6 years ago

dezeraecox commented 6 years ago

To enable easier compatibility with the MQ and PD cleaned outputs, split quant_data into separate functions for collecting unique peptides, and for calculating the average abundance

dezeraecox commented 6 years ago

ProteomicsUtils

dezeraecox commented 6 years ago

For MQ output, need to use the "id" column from the Peptides output (which can collect a list of id's for which the peptide is unique) that is then used to filter the Evidence output (following assignment of individual replicate ratios) to collect only unique peptides with values associated with each replicate.

df[df['id'].isin([unique_id's])]