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dfguan / purge_dups

haplotypic duplication identification tool
MIT License
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Running purge_dups from bioconda #118

Closed fgvieira closed 1 year ago

fgvieira commented 2 years ago

I've installed purge_dups through bioconda but, when I tried to follow the steps in the README, I could not find the python script to generate the config (or any of the other scripts).

How do I run purge_dups when it is installed from bioconda? Is there a manual? @astrovsky01 I saw on another issue that you created the bioconda recipe. Any suggestions on how I can run purge_dups?

thanks,

RvV1979 commented 1 year ago

conda does not install the helper scripts. Nevertheless, you can use your own pipeline following the example here: https://github.com/dfguan/purge_dups#pplg

fgvieira commented 1 year ago

I was just hoping for an easier and tested way to run this step and, since there is already a script, having it deployed through bioconda seemed like the best way to go. But thanks!