dfguan / purge_dups

haplotypic duplication identification tool
MIT License
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Probable error with parsing of the parameter "oe" #135

Open shelkmike opened 12 months ago

shelkmike commented 12 months ago

Purge_dups produces the same results when I run it with "oe": 1 and with "oe": 0 in a JSON config file. I suppose the problem is in the line if "oe" in config_dict: in run_purge_dups.py . "oe" is not a key of the dictionary config_dict, it's a key of the dictionary config_dict["gs"]. This line should probably look as if "oe" in config_dict["gs"]:.