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dfm / python-fsps

Python bindings to Charlie Conroy's Flexible Stellar Population Synthesis (FSPS) Fortran code
https://python-fsps.readthedocs.io
MIT License
66 stars 38 forks source link

installation issues? #48

Closed nell-byler closed 7 years ago

nell-byler commented 8 years ago

I am currently unable to install / run fsps on my laptop. I can't tell if this is the result of an accidental/forced upgrade to Mavericks or upgrading to the new numpy 1.10, because I did them both within a few days of each other and didn't notice anything until I tried to do a re-install python-fsps with the setup.py script.

I'm using homebrew-installed python 2.7.10_2 and gcc/gfortran. I have done a complete clean install of my /usr/local/ directory with homebrew, which included a reinstall of python, python modules, and gcc/gfortran. FSPS compiles and runs just fine!

I've tried installing python-fsps with numpy 1.10 and 1.8., both return errors with installation, but at different places (I tested 1.9 numpy as well, but apparently.this had an issue with f2py that put the wrong shebang at the head of the executable f2py script https://github.com/numpy/numpy/issues/5812).

Here is the output from the command "python setup.py install" with numpy 1.10.1:

running install running bdist_egg running egg_info writing fsps.egg-info/PKG-INFO writing top-level names to fsps.egg-info/top_level.txt writing dependency_links to fsps.egg-info/dependency_links.txt reading manifest file 'fsps.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'fsps.egg-info/SOURCES.txt' installing library code to build/bdist.macosx-10.11-x86_64/egg running install_lib running build_py running build_ext Running f2py on ['fsps.f90'] with flags ['-m', '_fsps', '-h', 'fsps.pyf', '--overwrite-signature'] Reading fortran codes... Reading file 'fsps.f90' (format:free) rmbadname1: Replacing "const" with "const_bn". rmbadname1: Replacing "const" with "const_bn". Post-processing... Block: _fsps Block: driver In: :_fsps:fsps.f90:driver get_useparameters: no module sps_utils info used by driver In: :_fsps:fsps.f90:driver get_useparameters: no module sps_vars info used by driver In: :_fsps:fsps.f90:driver getarrlen:variable "ntfull" undefined In: :_fsps:fsps.f90:driver getarrlen:variable "nz" undefined In: :_fsps:fsps.f90:driver getarrlen:variable "nz" undefined In: :_fsps:fsps.f90:driver getarrlen:variable "nt" undefined Block: setup In: :_fsps:fsps.f90:driver:setup get_useparameters: no module sps_utils info used by setup In: :_fsps:fsps.f90:driver:setup get_useparameters: no module sps_vars info used by setup Block: set_ssp_params In: :_fsps:fsps.f90:driver:set_ssp_params get_useparameters: no module sps_utils info used by set_ssp_params In: :_fsps:fsps.f90:driver:set_ssp_params get_useparameters: no module sps_vars info used by set_ssp_params Block: set_csp_params In: :_fsps:fsps.f90:driver:set_csp_params get_useparameters: no module sps_utils info used by set_csp_params In: :_fsps:fsps.f90:driver:set_csp_params get_useparameters: no module sps_vars info used by set_csp_params Block: ssps In: :_fsps:fsps.f90:driver:ssps get_useparameters: no module sps_utils info used by ssps In: :_fsps:fsps.f90:driver:ssps get_useparameters: no module sps_vars info used by ssps Block: ssp In: :_fsps:fsps.f90:driver:ssp get_useparameters: no module sps_utils info used by ssp In: :_fsps:fsps.f90:driver:ssp get_useparameters: no module sps_vars info used by ssp Block: get_ssp_spec In: :_fsps:fsps.f90:driver:get_ssp_spec get_useparameters: no module sps_utils info used by get_ssp_spec In: :_fsps:fsps.f90:driver:get_ssp_spec get_useparameters: no module sps_vars info used by get_ssp_spec Block: interp_ssp In: :_fsps:fsps.f90:driver:interp_ssp get_useparameters: no module sps_utils info used by interp_ssp In: :_fsps:fsps.f90:driver:interp_ssp get_useparameters: no module sps_vars info used by interp_ssp In: :_fsps:fsps.f90:driver:interp_ssp getarrlen:variable "nt" undefined Block: smooth_spectrum In: :_fsps:fsps.f90:driver:smooth_spectrum get_useparameters: no module sps_utils info used by smooth_spectrum In: :_fsps:fsps.f90:driver:smooth_spectrum get_useparameters: no module sps_vars info used by smooth_spectrum Block: compute In: :_fsps:fsps.f90:driver:compute get_useparameters: no module sps_utils info used by compute In: :_fsps:fsps.f90:driver:compute get_useparameters: no module sps_vars info used by compute Block: compute_zdep In: :_fsps:fsps.f90:driver:compute_zdep get_useparameters: no module sps_utils info used by compute_zdep In: :_fsps:fsps.f90:driver:compute_zdep get_useparameters: no module sps_vars info used by compute_zdep Block: get_spec In: :_fsps:fsps.f90:driver:get_spec get_useparameters: no module sps_utils info used by get_spec In: :_fsps:fsps.f90:driver:get_spec get_useparameters: no module sps_vars info used by get_spec Block: get_mags In: :_fsps:fsps.f90:driver:get_mags get_useparameters: no module sps_utils info used by get_mags In: :_fsps:fsps.f90:driver:get_mags get_useparameters: no module sps_vars info used by get_mags Block: stellar_spectrum In: :_fsps:fsps.f90:driver:stellar_spectrum get_useparameters: no module sps_utils info used by stellar_spectrum In: :_fsps:fsps.f90:driver:stellar_spectrum get_useparameters: no module sps_vars info used by stellar_spectrum Block: get_setup_vars In: :_fsps:fsps.f90:driver:get_setup_vars get_useparameters: no module sps_utils info used by get_setup_vars In: :_fsps:fsps.f90:driver:get_setup_vars get_useparameters: no module sps_vars info used by get_setup_vars Block: get_nz In: :_fsps:fsps.f90:driver:get_nz get_useparameters: no module sps_utils info used by get_nz In: :_fsps:fsps.f90:driver:get_nz get_useparameters: no module sps_vars info used by get_nz Block: get_zlegend In: :_fsps:fsps.f90:driver:get_zlegend get_useparameters: no module sps_utils info used by get_zlegend In: :_fsps:fsps.f90:driver:get_zlegend get_useparameters: no module sps_vars info used by get_zlegend Block: get_timefull In: :_fsps:fsps.f90:driver:get_timefull get_useparameters: no module sps_utils info used by get_timefull In: :_fsps:fsps.f90:driver:get_timefull get_useparameters: no module sps_vars info used by get_timefull Block: get_ntfull In: :_fsps:fsps.f90:driver:get_ntfull get_useparameters: no module sps_utils info used by get_ntfull In: :_fsps:fsps.f90:driver:get_ntfull get_useparameters: no module sps_vars info used by get_ntfull Block: get_nspec In: :_fsps:fsps.f90:driver:get_nspec get_useparameters: no module sps_utils info used by get_nspec In: :_fsps:fsps.f90:driver:get_nspec get_useparameters: no module sps_vars info used by get_nspec Block: get_nbands In: :_fsps:fsps.f90:driver:get_nbands get_useparameters: no module sps_utils info used by get_nbands In: :_fsps:fsps.f90:driver:get_nbands get_useparameters: no module sps_vars info used by get_nbands Block: get_lambda In: :_fsps:fsps.f90:driver:get_lambda get_useparameters: no module sps_utils info used by get_lambda In: :_fsps:fsps.f90:driver:get_lambda get_useparameters: no module sps_vars info used by get_lambda Block: get_isochrone_dimensions In: :_fsps:fsps.f90:driver:get_isochrone_dimensions get_useparameters: no module sps_utils info used by get_isochrone_dimensions In: :_fsps:fsps.f90:driver:get_isochrone_dimensions get_useparameters: no module sps_vars info used by get_isochrone_dimensions Block: get_nmass_isochrone In: :_fsps:fsps.f90:driver:get_nmass_isochrone get_useparameters: no module sps_utils info used by get_nmass_isochrone In: :_fsps:fsps.f90:driver:get_nmass_isochrone get_useparameters: no module sps_vars info used by get_nmass_isochrone Block: get_stats In: :_fsps:fsps.f90:driver:get_stats get_useparameters: no module sps_utils info used by get_stats In: :_fsps:fsps.f90:driver:get_stats get_useparameters: no module sps_vars info used by get_stats Block: write_isoc In: :_fsps:fsps.f90:driver:write_isoc get_useparameters: no module sps_utils info used by write_isoc In: :_fsps:fsps.f90:driver:write_isoc get_useparameters: no module sps_vars info used by write_isoc Post-processing (stage 2)... Block: _fsps Block: unknown_interface Block: driver Block: setup Block: set_ssp_params Block: set_csp_params Block: ssps Block: ssp Block: get_ssp_spec Block: interp_ssp Block: smooth_spectrum Block: compute Block: compute_zdep Block: get_spec Block: get_mags Block: stellar_spectrum Block: get_setup_vars Block: get_nz Block: get_zlegend Block: get_timefull Block: get_ntfull Block: get_nspec Block: get_nbands Block: get_lambda Block: get_isochrone_dimensions Block: get_nmass_isochrone Block: get_stats Block: write_isoc Saving signatures to file "./fsps.pyf" Running f2py on ['/Users/Nell/programs/fsps/src/add_agb_dust.o', '/Users/Nell/programs/fsps/src/add_bs.o', '/Users/Nell/programs/fsps/src/add_dust.o', '/Users/Nell/programs/fsps/src/add_nebular.o', '/Users/Nell/programs/fsps/src/add_remnants.o', '/Users/Nell/programs/fsps/src/compsp.o', '/Users/Nell/programs/fsps/src/funcint.o', '/Users/Nell/programs/fsps/src/get_lumdist.o', '/Users/Nell/programs/fsps/src/get_tuniv.o', '/Users/Nell/programs/fsps/src/getindx.o', '/Users/Nell/programs/fsps/src/getmags.o', '/Users/Nell/programs/fsps/src/getspec.o', '/Users/Nell/programs/fsps/src/igm_absorb.o', '/Users/Nell/programs/fsps/src/imf.o', '/Users/Nell/programs/fsps/src/imf_weight.o', '/Users/Nell/programs/fsps/src/intsfr.o', '/Users/Nell/programs/fsps/src/intspec.o', '/Users/Nell/programs/fsps/src/linterp.o', '/Users/Nell/programs/fsps/src/linterparr.o', '/Users/Nell/programs/fsps/src/locate.o', '/Users/Nell/programs/fsps/src/mod_gb.o', '/Users/Nell/programs/fsps/src/mod_hb.o', '/Users/Nell/programs/fsps/src/pz_convol.o', '/Users/Nell/programs/fsps/src/sbf.o', '/Users/Nell/programs/fsps/src/sfhstat.o', '/Users/Nell/programs/fsps/src/smoothspec.o', '/Users/Nell/programs/fsps/src/sps_setup.o', '/Users/Nell/programs/fsps/src/sps_utils.o', '/Users/Nell/programs/fsps/src/sps_vars.o', '/Users/Nell/programs/fsps/src/ssp_gen.o', '/Users/Nell/programs/fsps/src/tsum.o', '/Users/Nell/programs/fsps/src/vacairconv.o', '/Users/Nell/programs/fsps/src/write_isochrone.o', '/Users/Nell/programs/fsps/src/ztinterp.o', 'fsps.f90', 'fsps.pyf'] with flags ['-c', '-I/Users/Nell/programs/fsps/src', '--f90flags=-cpp', '--f90flags=-fPIC'] running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "_fsps" sources creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmp3xBgBt/src.macosx-10.11-x86_64-2.7 f2py options: [] f2py: fsps.pyf Reading fortran codes... Reading file 'fsps.pyf' (format:free) Post-processing... Block: _fsps Block: driver In: fsps.pyf:_fsps:unknown_interface:driver get_useparameters: no module sps_utils info used by driver In: fsps.pyf:_fsps:unknown_interface:driver get_useparameters: no module sps_vars info used by driver Block: setup In: fsps.pyf:_fsps:unknown_interface:driver:setup get_useparameters: no module sps_utils info used by setup In: fsps.pyf:_fsps:unknown_interface:driver:setup get_useparameters: no module sps_vars info used by setup Block: set_ssp_params In: fsps.pyf:_fsps:unknown_interface:driver:set_ssp_params get_useparameters: no module sps_utils info used by set_ssp_params In: fsps.pyf:_fsps:unknown_interface:driver:set_ssp_params get_useparameters: no module sps_vars info used by set_ssp_params Block: set_csp_params In: fsps.pyf:_fsps:unknown_interface:driver:set_csp_params get_useparameters: no module sps_utils info used by set_csp_params In: fsps.pyf:_fsps:unknown_interface:driver:set_csp_params get_useparameters: no module sps_vars info used by set_csp_params Block: ssps In: fsps.pyf:_fsps:unknown_interface:driver:ssps get_useparameters: no module sps_utils info used by ssps In: fsps.pyf:_fsps:unknown_interface:driver:ssps get_useparameters: no module sps_vars info used by ssps Block: ssp In: fsps.pyf:_fsps:unknown_interface:driver:ssp get_useparameters: no module sps_utils info used by ssp In: fsps.pyf:_fsps:unknown_interface:driver:ssp get_useparameters: no module sps_vars info used by ssp Block: get_ssp_spec In: fsps.pyf:_fsps:unknown_interface:driver:get_ssp_spec get_useparameters: no module sps_utils info used by get_ssp_spec In: fsps.pyf:_fsps:unknown_interface:driver:get_ssp_spec get_useparameters: no module sps_vars info used by get_ssp_spec Block: interp_ssp In: fsps.pyf:_fsps:unknown_interface:driver:interp_ssp get_useparameters: no module sps_utils info used by interp_ssp In: fsps.pyf:_fsps:unknown_interface:driver:interp_ssp get_useparameters: no module sps_vars info used by interp_ssp Block: smooth_spectrum In: fsps.pyf:_fsps:unknown_interface:driver:smooth_spectrum get_useparameters: no module sps_utils info used by smooth_spectrum In: fsps.pyf:_fsps:unknown_interface:driver:smooth_spectrum get_useparameters: no module sps_vars info used by smooth_spectrum Block: compute In: fsps.pyf:_fsps:unknown_interface:driver:compute get_useparameters: no module sps_utils info used by compute In: fsps.pyf:_fsps:unknown_interface:driver:compute get_useparameters: no module sps_vars info used by compute Block: compute_zdep In: fsps.pyf:_fsps:unknown_interface:driver:compute_zdep get_useparameters: no module sps_utils info used by compute_zdep In: fsps.pyf:_fsps:unknown_interface:driver:compute_zdep get_useparameters: no module sps_vars info used by compute_zdep Block: get_spec In: fsps.pyf:_fsps:unknown_interface:driver:get_spec get_useparameters: no module sps_utils info used by get_spec In: fsps.pyf:_fsps:unknown_interface:driver:get_spec get_useparameters: no module sps_vars info used by get_spec Block: get_mags In: fsps.pyf:_fsps:unknown_interface:driver:get_mags get_useparameters: no module sps_utils info used by get_mags In: fsps.pyf:_fsps:unknown_interface:driver:get_mags get_useparameters: no module sps_vars info used by get_mags Block: stellar_spectrum In: fsps.pyf:_fsps:unknown_interface:driver:stellar_spectrum get_useparameters: no module sps_utils info used by stellar_spectrum In: fsps.pyf:_fsps:unknown_interface:driver:stellar_spectrum get_useparameters: no module sps_vars info used by stellar_spectrum Block: get_setup_vars In: fsps.pyf:_fsps:unknown_interface:driver:get_setup_vars get_useparameters: no module sps_utils info used by get_setup_vars In: fsps.pyf:_fsps:unknown_interface:driver:get_setup_vars get_useparameters: no module sps_vars info used by get_setup_vars Block: get_nz In: fsps.pyf:_fsps:unknown_interface:driver:get_nz get_useparameters: no module sps_utils info used by get_nz In: fsps.pyf:_fsps:unknown_interface:driver:get_nz get_useparameters: no module sps_vars info used by get_nz Block: get_zlegend In: fsps.pyf:_fsps:unknown_interface:driver:get_zlegend get_useparameters: no module sps_utils info used by get_zlegend In: fsps.pyf:_fsps:unknown_interface:driver:get_zlegend get_useparameters: no module sps_vars info used by get_zlegend Block: get_timefull In: fsps.pyf:_fsps:unknown_interface:driver:get_timefull get_useparameters: no module sps_utils info used by get_timefull In: fsps.pyf:_fsps:unknown_interface:driver:get_timefull get_useparameters: no module sps_vars info used by get_timefull Block: get_ntfull In: fsps.pyf:_fsps:unknown_interface:driver:get_ntfull get_useparameters: no module sps_utils info used by get_ntfull In: fsps.pyf:_fsps:unknown_interface:driver:get_ntfull get_useparameters: no module sps_vars info used by get_ntfull Block: get_nspec In: fsps.pyf:_fsps:unknown_interface:driver:get_nspec get_useparameters: no module sps_utils info used by get_nspec In: fsps.pyf:_fsps:unknown_interface:driver:get_nspec get_useparameters: no module sps_vars info used by get_nspec Block: get_nbands In: fsps.pyf:_fsps:unknown_interface:driver:get_nbands get_useparameters: no module sps_utils info used by get_nbands In: fsps.pyf:_fsps:unknown_interface:driver:get_nbands get_useparameters: no module sps_vars info used by get_nbands Block: get_lambda In: fsps.pyf:_fsps:unknown_interface:driver:get_lambda get_useparameters: no module sps_utils info used by get_lambda In: fsps.pyf:_fsps:unknown_interface:driver:get_lambda get_useparameters: no module sps_vars info used by get_lambda Block: get_isochrone_dimensions In: fsps.pyf:_fsps:unknown_interface:driver:get_isochrone_dimensions get_useparameters: no module sps_utils info used by get_isochrone_dimensions In: fsps.pyf:_fsps:unknown_interface:driver:get_isochrone_dimensions get_useparameters: no module sps_vars info used by get_isochrone_dimensions Block: get_nmass_isochrone In: fsps.pyf:_fsps:unknown_interface:driver:get_nmass_isochrone get_useparameters: no module sps_utils info used by get_nmass_isochrone In: fsps.pyf:_fsps:unknown_interface:driver:get_nmass_isochrone get_useparameters: no module sps_vars info used by get_nmass_isochrone Block: get_stats In: fsps.pyf:_fsps:unknown_interface:driver:get_stats get_useparameters: no module sps_utils info used by get_stats In: fsps.pyf:_fsps:unknown_interface:driver:get_stats get_useparameters: no module sps_vars info used by get_stats Block: write_isoc In: fsps.pyf:_fsps:unknown_interface:driver:write_isoc get_useparameters: no module sps_utils info used by write_isoc In: fsps.pyf:_fsps:unknown_interface:driver:write_isoc get_useparameters: no module sps_vars info used by write_isoc Post-processing (stage 2)... Block: _fsps Block: unknown_interface Block: driver Block: setup Block: set_ssp_params Block: set_csp_params Block: ssps Block: ssp Block: get_ssp_spec Block: interp_ssp Block: smooth_spectrum Block: compute Block: compute_zdep Block: get_spec Block: get_mags Block: stellar_spectrum Block: get_setup_vars Block: get_nz Block: get_zlegend Block: get_timefull Block: get_ntfull Block: get_nspec Block: get_nbands Block: get_lambda Block: get_isochrone_dimensions Block: get_nmass_isochrone Block: get_stats Block: write_isoc Building modules... Building module "_fsps"... Constructing F90 module support for "driver"... Variables: pset is_setup ocompsp has_ssp has_ssp_age getctype: No C-type found in "{'typespec': 'type', 'typename': 'params'}", assuming void. Traceback (most recent call last): File "setup.py", line 121, in "Programming Language :: Python", File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/usr/local/lib/python2.7/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/usr/local/lib/python2.7/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/usr/local/lib/python2.7/site-packages/setuptools/command/bdist_egg.py", line 160, in run cmd = self.call_command('install_lib', warn_dir=0) File "/usr/local/lib/python2.7/site-packages/setuptools/command/bdist_egg.py", line 146, in call_command self.run_command(cmdname) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/usr/local/lib/python2.7/site-packages/setuptools/command/install_lib.py", line 10, in run self.build() File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/install_lib.py", line 111, in build self.run_command('build_ext') File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "setup.py", line 61, in run invoke_f2py(fns, flags, wd='fsps') File "setup.py", line 28, in invoke_f2py main() File "/usr/local/lib/python2.7/site-packages/numpy/f2py/f2py2e.py", line 648, in main run_compile() File "/usr/local/lib/python2.7/site-packages/numpy/f2py/f2py2e.py", line 633, in run_compile setup(ext_modules=[ext]) File "/usr/local/lib/python2.7/site-packages/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/usr/local/lib/python2.7/site-packages/numpy/distutils/command/build.py", line 47, in run old_build.run(self) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/build.py", line 127, in run self.run_command(cmd_name) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/usr/local/lib/python2.7/site-packages/numpy/distutils/command/build_src.py", line 153, in run self.build_sources() File "/usr/local/lib/python2.7/site-packages/numpy/distutils/command/build_src.py", line 170, in build_sources self.build_extension_sources(ext) File "/usr/local/lib/python2.7/site-packages/numpy/distutils/command/build_src.py", line 335, in build_extension_sources sources = self.f2py_sources(sources, ext) File "/usr/local/lib/python2.7/site-packages/numpy/distutils/command/build_src.py", line 574, in f2py_sources

and here is the output from running setup.py with numpy 1.8.2:

running install running bdist_egg running egg_info writing fsps.egg-info/PKG-INFO writing top-level names to fsps.egg-info/top_level.txt writing dependency_links to fsps.egg-info/dependency_links.txt reading manifest file 'fsps.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'fsps.egg-info/SOURCES.txt' installing library code to build/bdist.macosx-10.11-x86_64/egg running install_lib running build_py running build_ext Running f2py on ['fsps.f90'] with flags ['-m', '_fsps', '-h', 'fsps.pyf', '--overwrite-signature'] Reading fortran codes... Reading file 'fsps.f90' (format:free) rmbadname1: Replacing "const" with "const_bn". rmbadname1: Replacing "const" with "const_bn". Post-processing... Block: _fsps Block: driver In: :_fsps:fsps.f90:driver get_useparameters: no module sps_utils info used by driver In: :_fsps:fsps.f90:driver get_useparameters: no module sps_vars info used by driver In: :_fsps:fsps.f90:driver getarrlen:variable "ntfull" undefined In: :_fsps:fsps.f90:driver getarrlen:variable "nz" undefined In: :_fsps:fsps.f90:driver getarrlen:variable "nz" undefined In: :_fsps:fsps.f90:driver getarrlen:variable "nt" undefined Block: setup In: :_fsps:fsps.f90:driver:setup get_useparameters: no module sps_utils info used by setup In: :_fsps:fsps.f90:driver:setup get_useparameters: no module sps_vars info used by setup Block: set_ssp_params In: :_fsps:fsps.f90:driver:set_ssp_params get_useparameters: no module sps_utils info used by set_ssp_params In: :_fsps:fsps.f90:driver:set_ssp_params get_useparameters: no module sps_vars info used by set_ssp_params Block: set_csp_params In: :_fsps:fsps.f90:driver:set_csp_params get_useparameters: no module sps_utils info used by set_csp_params In: :_fsps:fsps.f90:driver:set_csp_params get_useparameters: no module sps_vars info used by set_csp_params Block: ssps In: :_fsps:fsps.f90:driver:ssps get_useparameters: no module sps_utils info used by ssps In: :_fsps:fsps.f90:driver:ssps get_useparameters: no module sps_vars info used by ssps Block: ssp In: :_fsps:fsps.f90:driver:ssp get_useparameters: no module sps_utils info used by ssp In: :_fsps:fsps.f90:driver:ssp get_useparameters: no module sps_vars info used by ssp Block: get_ssp_spec In: :_fsps:fsps.f90:driver:get_ssp_spec get_useparameters: no module sps_utils info used by get_ssp_spec In: :_fsps:fsps.f90:driver:get_ssp_spec get_useparameters: no module sps_vars info used by get_ssp_spec Block: interp_ssp In: :_fsps:fsps.f90:driver:interp_ssp get_useparameters: no module sps_utils info used by interp_ssp In: :_fsps:fsps.f90:driver:interp_ssp get_useparameters: no module sps_vars info used by interp_ssp In: :_fsps:fsps.f90:driver:interp_ssp getarrlen:variable "nt" undefined Block: smooth_spectrum In: :_fsps:fsps.f90:driver:smooth_spectrum get_useparameters: no module sps_utils info used by smooth_spectrum In: :_fsps:fsps.f90:driver:smooth_spectrum get_useparameters: no module sps_vars info used by smooth_spectrum Block: compute In: :_fsps:fsps.f90:driver:compute get_useparameters: no module sps_utils info used by compute In: :_fsps:fsps.f90:driver:compute get_useparameters: no module sps_vars info used by compute Block: compute_zdep In: :_fsps:fsps.f90:driver:compute_zdep get_useparameters: no module sps_utils info used by compute_zdep In: :_fsps:fsps.f90:driver:compute_zdep get_useparameters: no module sps_vars info used by compute_zdep Block: get_spec In: :_fsps:fsps.f90:driver:get_spec get_useparameters: no module sps_utils info used by get_spec In: :_fsps:fsps.f90:driver:get_spec get_useparameters: no module sps_vars info used by get_spec Block: get_mags In: :_fsps:fsps.f90:driver:get_mags get_useparameters: no module sps_utils info used by get_mags In: :_fsps:fsps.f90:driver:get_mags get_useparameters: no module sps_vars info used by get_mags Block: stellar_spectrum In: :_fsps:fsps.f90:driver:stellar_spectrum get_useparameters: no module sps_utils info used by stellar_spectrum In: :_fsps:fsps.f90:driver:stellar_spectrum get_useparameters: no module sps_vars info used by stellar_spectrum Block: get_setup_vars In: :_fsps:fsps.f90:driver:get_setup_vars get_useparameters: no module sps_utils info used by get_setup_vars In: :_fsps:fsps.f90:driver:get_setup_vars get_useparameters: no module sps_vars info used by get_setup_vars Block: get_nz In: :_fsps:fsps.f90:driver:get_nz get_useparameters: no module sps_utils info used by get_nz In: :_fsps:fsps.f90:driver:get_nz get_useparameters: no module sps_vars info used by get_nz Block: get_zlegend In: :_fsps:fsps.f90:driver:get_zlegend get_useparameters: no module sps_utils info used by get_zlegend In: :_fsps:fsps.f90:driver:get_zlegend get_useparameters: no module sps_vars info used by get_zlegend Block: get_timefull In: :_fsps:fsps.f90:driver:get_timefull get_useparameters: no module sps_utils info used by get_timefull In: :_fsps:fsps.f90:driver:get_timefull get_useparameters: no module sps_vars info used by get_timefull Block: get_ntfull In: :_fsps:fsps.f90:driver:get_ntfull get_useparameters: no module sps_utils info used by get_ntfull In: :_fsps:fsps.f90:driver:get_ntfull get_useparameters: no module sps_vars info used by get_ntfull Block: get_nspec In: :_fsps:fsps.f90:driver:get_nspec get_useparameters: no module sps_utils info used by get_nspec In: :_fsps:fsps.f90:driver:get_nspec get_useparameters: no module sps_vars info used by get_nspec Block: get_nbands In: :_fsps:fsps.f90:driver:get_nbands get_useparameters: no module sps_utils info used by get_nbands In: :_fsps:fsps.f90:driver:get_nbands get_useparameters: no module sps_vars info used by get_nbands Block: get_lambda In: :_fsps:fsps.f90:driver:get_lambda get_useparameters: no module sps_utils info used by get_lambda In: :_fsps:fsps.f90:driver:get_lambda get_useparameters: no module sps_vars info used by get_lambda Block: get_isochrone_dimensions In: :_fsps:fsps.f90:driver:get_isochrone_dimensions get_useparameters: no module sps_utils info used by get_isochrone_dimensions In: :_fsps:fsps.f90:driver:get_isochrone_dimensions get_useparameters: no module sps_vars info used by get_isochrone_dimensions Block: get_nmass_isochrone In: :_fsps:fsps.f90:driver:get_nmass_isochrone get_useparameters: no module sps_utils info used by get_nmass_isochrone In: :_fsps:fsps.f90:driver:get_nmass_isochrone get_useparameters: no module sps_vars info used by get_nmass_isochrone Block: get_stats In: :_fsps:fsps.f90:driver:get_stats get_useparameters: no module sps_utils info used by get_stats In: :_fsps:fsps.f90:driver:get_stats get_useparameters: no module sps_vars info used by get_stats Block: write_isoc In: :_fsps:fsps.f90:driver:write_isoc get_useparameters: no module sps_utils info used by write_isoc In: :_fsps:fsps.f90:driver:write_isoc get_useparameters: no module sps_vars info used by write_isoc Post-processing (stage 2)... Block: _fsps Block: unknown_interface Block: driver Block: setup Block: set_ssp_params Block: set_csp_params Block: ssps Block: ssp Block: get_ssp_spec Block: interp_ssp Block: smooth_spectrum Block: compute Block: compute_zdep Block: get_spec Block: get_mags Block: stellar_spectrum Block: get_setup_vars Block: get_nz Block: get_zlegend Block: get_timefull Block: get_ntfull Block: get_nspec Block: get_nbands Block: get_lambda Block: get_isochrone_dimensions Block: get_nmass_isochrone Block: get_stats Block: write_isoc Saving signatures to file "./fsps.pyf" Running f2py on ['/Users/Nell/programs/fsps/src/add_agb_dust.o', '/Users/Nell/programs/fsps/src/add_bs.o', '/Users/Nell/programs/fsps/src/add_dust.o', '/Users/Nell/programs/fsps/src/add_nebular.o', '/Users/Nell/programs/fsps/src/add_remnants.o', '/Users/Nell/programs/fsps/src/compsp.o', '/Users/Nell/programs/fsps/src/funcint.o', '/Users/Nell/programs/fsps/src/get_lumdist.o', '/Users/Nell/programs/fsps/src/get_tuniv.o', '/Users/Nell/programs/fsps/src/getindx.o', '/Users/Nell/programs/fsps/src/getmags.o', '/Users/Nell/programs/fsps/src/getspec.o', '/Users/Nell/programs/fsps/src/igm_absorb.o', '/Users/Nell/programs/fsps/src/imf.o', '/Users/Nell/programs/fsps/src/imf_weight.o', '/Users/Nell/programs/fsps/src/intsfr.o', '/Users/Nell/programs/fsps/src/intspec.o', '/Users/Nell/programs/fsps/src/linterp.o', '/Users/Nell/programs/fsps/src/linterparr.o', '/Users/Nell/programs/fsps/src/locate.o', '/Users/Nell/programs/fsps/src/mod_gb.o', '/Users/Nell/programs/fsps/src/mod_hb.o', '/Users/Nell/programs/fsps/src/pz_convol.o', '/Users/Nell/programs/fsps/src/sbf.o', '/Users/Nell/programs/fsps/src/sfhstat.o', '/Users/Nell/programs/fsps/src/smoothspec.o', '/Users/Nell/programs/fsps/src/sps_setup.o', '/Users/Nell/programs/fsps/src/sps_utils.o', '/Users/Nell/programs/fsps/src/sps_vars.o', '/Users/Nell/programs/fsps/src/ssp_gen.o', '/Users/Nell/programs/fsps/src/tsum.o', '/Users/Nell/programs/fsps/src/vacairconv.o', '/Users/Nell/programs/fsps/src/write_isochrone.o', '/Users/Nell/programs/fsps/src/ztinterp.o', 'fsps.f90', 'fsps.pyf'] with flags ['-c', '-I/Users/Nell/programs/fsps/src', '--f90flags=-cpp', '--f90flags=-fPIC'] running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "_fsps" sources creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7 f2py options: [] f2py: fsps.pyf Reading fortran codes... Reading file 'fsps.pyf' (format:free) Post-processing... Block: _fsps Block: driver In: fsps.pyf:_fsps:unknown_interface:driver get_useparameters: no module sps_utils info used by driver In: fsps.pyf:_fsps:unknown_interface:driver get_useparameters: no module sps_vars info used by driver Block: setup In: fsps.pyf:_fsps:unknown_interface:driver:setup get_useparameters: no module sps_utils info used by setup In: fsps.pyf:_fsps:unknown_interface:driver:setup get_useparameters: no module sps_vars info used by setup Block: set_ssp_params In: fsps.pyf:_fsps:unknown_interface:driver:set_ssp_params get_useparameters: no module sps_utils info used by set_ssp_params In: fsps.pyf:_fsps:unknown_interface:driver:set_ssp_params get_useparameters: no module sps_vars info used by set_ssp_params Block: set_csp_params In: fsps.pyf:_fsps:unknown_interface:driver:set_csp_params get_useparameters: no module sps_utils info used by set_csp_params In: fsps.pyf:_fsps:unknown_interface:driver:set_csp_params get_useparameters: no module sps_vars info used by set_csp_params Block: ssps In: fsps.pyf:_fsps:unknown_interface:driver:ssps get_useparameters: no module sps_utils info used by ssps In: fsps.pyf:_fsps:unknown_interface:driver:ssps get_useparameters: no module sps_vars info used by ssps Block: ssp In: fsps.pyf:_fsps:unknown_interface:driver:ssp get_useparameters: no module sps_utils info used by ssp In: fsps.pyf:_fsps:unknown_interface:driver:ssp get_useparameters: no module sps_vars info used by ssp Block: get_ssp_spec In: fsps.pyf:_fsps:unknown_interface:driver:get_ssp_spec get_useparameters: no module sps_utils info used by get_ssp_spec In: fsps.pyf:_fsps:unknown_interface:driver:get_ssp_spec get_useparameters: no module sps_vars info used by get_ssp_spec Block: interp_ssp In: fsps.pyf:_fsps:unknown_interface:driver:interp_ssp get_useparameters: no module sps_utils info used by interp_ssp In: fsps.pyf:_fsps:unknown_interface:driver:interp_ssp get_useparameters: no module sps_vars info used by interp_ssp Block: smooth_spectrum In: fsps.pyf:_fsps:unknown_interface:driver:smooth_spectrum get_useparameters: no module sps_utils info used by smooth_spectrum In: fsps.pyf:_fsps:unknown_interface:driver:smooth_spectrum get_useparameters: no module sps_vars info used by smooth_spectrum Block: compute In: fsps.pyf:_fsps:unknown_interface:driver:compute get_useparameters: no module sps_utils info used by compute In: fsps.pyf:_fsps:unknown_interface:driver:compute get_useparameters: no module sps_vars info used by compute Block: compute_zdep In: fsps.pyf:_fsps:unknown_interface:driver:compute_zdep get_useparameters: no module sps_utils info used by compute_zdep In: fsps.pyf:_fsps:unknown_interface:driver:compute_zdep get_useparameters: no module sps_vars info used by compute_zdep Block: get_spec In: fsps.pyf:_fsps:unknown_interface:driver:get_spec get_useparameters: no module sps_utils info used by get_spec In: fsps.pyf:_fsps:unknown_interface:driver:get_spec get_useparameters: no module sps_vars info used by get_spec Block: get_mags In: fsps.pyf:_fsps:unknown_interface:driver:get_mags get_useparameters: no module sps_utils info used by get_mags In: fsps.pyf:_fsps:unknown_interface:driver:get_mags get_useparameters: no module sps_vars info used by get_mags Block: stellar_spectrum In: fsps.pyf:_fsps:unknown_interface:driver:stellar_spectrum get_useparameters: no module sps_utils info used by stellar_spectrum In: fsps.pyf:_fsps:unknown_interface:driver:stellar_spectrum get_useparameters: no module sps_vars info used by stellar_spectrum Block: get_setup_vars In: fsps.pyf:_fsps:unknown_interface:driver:get_setup_vars get_useparameters: no module sps_utils info used by get_setup_vars In: fsps.pyf:_fsps:unknown_interface:driver:get_setup_vars get_useparameters: no module sps_vars info used by get_setup_vars Block: get_nz In: fsps.pyf:_fsps:unknown_interface:driver:get_nz get_useparameters: no module sps_utils info used by get_nz In: fsps.pyf:_fsps:unknown_interface:driver:get_nz get_useparameters: no module sps_vars info used by get_nz Block: get_zlegend In: fsps.pyf:_fsps:unknown_interface:driver:get_zlegend get_useparameters: no module sps_utils info used by get_zlegend In: fsps.pyf:_fsps:unknown_interface:driver:get_zlegend get_useparameters: no module sps_vars info used by get_zlegend Block: get_timefull In: fsps.pyf:_fsps:unknown_interface:driver:get_timefull get_useparameters: no module sps_utils info used by get_timefull In: fsps.pyf:_fsps:unknown_interface:driver:get_timefull get_useparameters: no module sps_vars info used by get_timefull Block: get_ntfull In: fsps.pyf:_fsps:unknown_interface:driver:get_ntfull get_useparameters: no module sps_utils info used by get_ntfull In: fsps.pyf:_fsps:unknown_interface:driver:get_ntfull get_useparameters: no module sps_vars info used by get_ntfull Block: get_nspec In: fsps.pyf:_fsps:unknown_interface:driver:get_nspec get_useparameters: no module sps_utils info used by get_nspec In: fsps.pyf:_fsps:unknown_interface:driver:get_nspec get_useparameters: no module sps_vars info used by get_nspec Block: get_nbands In: fsps.pyf:_fsps:unknown_interface:driver:get_nbands get_useparameters: no module sps_utils info used by get_nbands In: fsps.pyf:_fsps:unknown_interface:driver:get_nbands get_useparameters: no module sps_vars info used by get_nbands Block: get_lambda In: fsps.pyf:_fsps:unknown_interface:driver:get_lambda get_useparameters: no module sps_utils info used by get_lambda In: fsps.pyf:_fsps:unknown_interface:driver:get_lambda get_useparameters: no module sps_vars info used by get_lambda Block: get_isochrone_dimensions In: fsps.pyf:_fsps:unknown_interface:driver:get_isochrone_dimensions get_useparameters: no module sps_utils info used by get_isochrone_dimensions In: fsps.pyf:_fsps:unknown_interface:driver:get_isochrone_dimensions get_useparameters: no module sps_vars info used by get_isochrone_dimensions Block: get_nmass_isochrone In: fsps.pyf:_fsps:unknown_interface:driver:get_nmass_isochrone get_useparameters: no module sps_utils info used by get_nmass_isochrone In: fsps.pyf:_fsps:unknown_interface:driver:get_nmass_isochrone get_useparameters: no module sps_vars info used by get_nmass_isochrone Block: get_stats In: fsps.pyf:_fsps:unknown_interface:driver:get_stats get_useparameters: no module sps_utils info used by get_stats In: fsps.pyf:_fsps:unknown_interface:driver:get_stats get_useparameters: no module sps_vars info used by get_stats Block: write_isoc In: fsps.pyf:_fsps:unknown_interface:driver:write_isoc get_useparameters: no module sps_utils info used by write_isoc In: fsps.pyf:_fsps:unknown_interface:driver:write_isoc get_useparameters: no module sps_vars info used by write_isoc Post-processing (stage 2)... Block: _fsps Block: unknown_interface Block: driver Block: setup Block: set_ssp_params Block: set_csp_params Block: ssps Block: ssp Block: get_ssp_spec Block: interp_ssp Block: smooth_spectrum Block: compute Block: compute_zdep Block: get_spec Block: get_mags Block: stellar_spectrum Block: get_setup_vars Block: get_nz Block: get_zlegend Block: get_timefull Block: get_ntfull Block: get_nspec Block: get_nbands Block: get_lambda Block: get_isochrone_dimensions Block: get_nmass_isochrone Block: get_stats Block: write_isoc Building modules... Building module "_fsps"... Constructing F90 module support for "driver"... Variables: is_setup Constructing wrapper function "driver.setup"... setup(compute_vega_mags0) Constructing wrapper function "driver.set_ssp_params"... set_ssp_params(imf_type0,imf1,imf2,imf3,vdmc,mdave,dell,delt,sbss,fbhb,pagb,add_stellar_remnants0,tpagb_norm_type0,add_agb_dust_model0,agb_dust,redgb,masscut,fcstar,evtype) Constructing wrapper function "driver.set_csp_params"... set_csp_params(smooth_velocity0,vactoair_flag0,redshift_colors0,dust_type0,add_dust_emission0,add_neb_emission0,add_neb_continuum0,cloudy_dust0,add_igm_absorption0,zmet,sfh,wgp1,wgp2,wgp3,tau,const_bn,tage,fburst,tburst,dust1,dust2,logzsol,zred,pmetals,dust_clumps,frac_nodust,dust_index,dust_tesc,frac_obrun,uvb,mwr,dust1_index,sf_start,sf_trunc,sf_slope,duste_gamma,duste_umin,duste_qpah,sigma_smooth,min_wave_smooth,max_wave_smooth,gas_logu,gas_logz,igm_factor) Constructing wrapper function "driver.ssps"... ssps() Constructing wrapper function "driver.ssp"... ssp(zi) Constructing wrapper function "driver.get_ssp_spec"... get_ssp_spec(ssp_spec_out,ssp_mass_out,ssp_lbol_out,[ns,n_age,n_z]) Constructing wrapper function "driver.interp_ssp"... interp_ssp(zpos,tpos,spec,mass,lbol,[ns]) Constructing wrapper function "driver.smooth_spectrum"... smooth_spectrum(wave,spec,sigma_broad,minw,maxw,[ns]) Constructing wrapper function "driver.compute"... compute() Constructing wrapper function "driver.compute_zdep"... compute_zdep(ns,n_age,ztype) Constructing wrapper function "driver.get_spec"... spec_out = get_spec(ns,n_age) Constructing wrapper function "driver.get_mags"... mags = get_mags(ns,n_age,z_red,mc,[n_bands]) Constructing wrapper function "driver.stellar_spectrum"... stellar_spectrum(mact,logt,lbol,logg,phase,ffco,wght,spec_out,[ns]) Constructing wrapper function "driver.get_setup_vars"... cvms = get_setup_vars() Constructing wrapper function "driver.get_nz"... n_z = get_nz() Constructing wrapper function "driver.get_zlegend"... z_legend = get_zlegend(n_z) Constructing wrapper function "driver.get_timefull"... timefull = get_timefull(n_age) Constructing wrapper function "driver.get_ntfull"... n_age = get_ntfull() Constructing wrapper function "driver.get_nspec"... ns = get_nspec() Constructing wrapper function "driver.get_nbands"... nb = get_nbands() Constructing wrapper function "driver.get_lambda"... lambda = get_lambda(ns) Constructing wrapper function "driver.get_isochrone_dimensions"... n_age,n_mass = get_isochrone_dimensions() Constructing wrapper function "driver.get_nmass_isochrone"... nmass = get_nmass_isochrone(zz,tt) Constructing wrapper function "driver.get_stats"... age,mass_csp,lbol_csp,sfr,mdust = get_stats(n_age) Constructing wrapper function "driver.write_isoc"... write_isoc(outfile) Wrote C/API module "_fsps" to file "/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/_fspsmodule.c" Fortran 90 wrappers are saved to "/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/_fsps-f2pywrappers2.f90" adding '/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/fortranobject.c' to sources. adding '/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7' to include_dirs. copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7 copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7 adding '/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/_fsps-f2pywrappers2.f90' to sources. build_src: building npy-pkg config files running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext customize Gnu95FCompiler Found executable /usr/local/bin/gfortran Found executable /usr/local/bin/gcc-5 customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building '_fsps' extension compiling C sources C compiler: /usr/local/bin/gcc-5 -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/var creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/var/folders creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/var/folders/t2 creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh creating /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7 compile options: '-I/Users/Nell/programs/fsps/src -I/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' gcc-5: /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/_fspsmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/fortranobject.h:13, from /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/_fspsmodule.c:18: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]

warning "Using deprecated NumPy API, disable it by " \

^ /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/_fspsmodule.c:144:12: warning: 'f2py_size' defined but not used [-Wunused-function] static int f2py_size(PyArrayObject* var, ...) ^ gcc-5: /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/fortranobject.h:13, from /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]

warning "Using deprecated NumPy API, disable it by " \

^ compiling Fortran 90 module sources Fortran f77 compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran -fPIC -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -fPIC -O3 -funroll-loops compile options: '-I/Users/Nell/programs/fsps/src -I/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c' extra options: '-J/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/ -I/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/' gfortran:f90: fsps.f90 fsps.f90:144:17: Error: 'sf_slope' at (1) is not a member of the 'params' structure fsps.f90:144:17: Error: 'sf_slope' at (1) is not a member of the 'params' structure error: Command "/usr/local/bin/gfortran -fPIC -fPIC -O3 -funroll-loops -I/Users/Nell/programs/fsps/src -I/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/src.macosx-10.11-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.10_2/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c -c fsps.f90 -o /var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/fsps.o -J/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/ -I/var/folders/t2/rr3k4qm54xg2vq26yngyj7cw0000gn/T/tmpFFGdJh/" failed with exit status 1

bd-j commented 8 years ago

Oh no! What is your FSPS commit hash? There was a change to FSPS over the summer, where sf_theta was renamed sf_slope. The most recent FSPS/master is 6febb61. Having the most recent fsps should fix the build for numpy 1.8.2.

I don't know what's wrong with the numpy 1.10 build.

bd-j commented 8 years ago

It looks like the numpy 1.10 build is having issues with wrapping the FSPS params structure. This kind of error pops up on the numpy issues list, where it is suggested that Fortran structures aren't supported at all in f2py! e.g. numpy/numpy#4645 any thoughts @dfm?

Also, I've been able to build python-FSPS with numpy 1.9.2, I think from homebrew

nell-byler commented 8 years ago

YES! working now -- I had tried the most recent git FSPS with numpy 1.10, and 1.8 and the older FSPS with numpy 1.10 and 1.8, but only tried the older version with 1.9.2 -- I still get f2py errors but python-fsps installs and runs which is all I care about right now ^__^ yay!

Nolaa commented 8 years ago

I have Numpy and SPS installed and have added the "SPS_HOME" as an environment variable to .bash_profile like this:

export SPS_HOME="/Users/najmeh/Research/Autumn2015/FSPSmodel-Charley_Coonroy/fsps-master"

Then I edited the makefile in the src directory. But, when I try to install fsps using this command:

pip install fsps

I keep getting this error:

Collecting fsps
  Using cached fsps-0.1.1.tar.gz
    Complete output from command python setup.py egg_info:
    Traceback (most recent call last):
      File "<string>", line 20, in <module>
      File "/private/tmp/pip-build-I1078Y/fsps/setup.py", line 75, in <module>
        from fsps import __version__
      File "fsps/__init__.py", line 30, in <module>
        raise ImportError("You need to have the SPS_HOME environment variable")
    ImportError: You need to have the SPS_HOME environment variable

    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/tmp/pip-build-I1078Y/fsps

I have no idea how to fix it. Any help on that will be appreciated.

bd-j commented 8 years ago

Hi @Nolaa. The package version installed by pip is unfortunately quite out of date and does not work with the most recent versions of FSPS, sorry about that. Please follow the "Installing development version" instructions at http://dan.iel.fm/python-fsps/current/installation.

Also, make sure you compile FSPS (following the instructions in the FSPS manual) before installing python-fsps. If you are still having problems with the SPS_HOME variable, try typing echo $SPS_HOME at the command line to make sure the variable is properly set.

Nolaa commented 8 years ago

Thanks for your comment @bd-j. About SPS_HOME variable, actually I used echo $SPS_HOME every time before doing any thing else. After compiling FSPS by typing make in the src directory, this time I get another error about fsps 

bash-3.2$ echo $SPS_HOME
/Users/najmeh/Research/Autumn2015/FSPSmodel-Charley_Coonroy/fsps-master
bash-3.2$ git clone https://github.com/dfm/python-fsps.git
Cloning into 'python-fsps'...
remote: Counting objects: 850, done.
remote: Total 850 (delta 0), reused 0 (delta 0), pack-reused 850
Receiving objects: 100% (850/850), 365.82 KiB | 0 bytes/s, done.
Resolving deltas: 100% (451/451), done.
Checking connectivity... done.
bash-3.2$ cd python-fsps
bash-3.2$ python setup.py install
Traceback (most recent call last):
  File "setup.py", line 87, in <module>
    from fsps import __version__
  File "/Users/najmeh/python-fsps/fsps/__init__.py", line 41, in <module>
    raise ImportError("Your FSPS version is not under git version "
ImportError: Your FSPS version is not under git version control. FSPS is now available on github at https://github.com/cconroy20/fsps
bash-3.2$
bd-j commented 8 years ago

@Nolaa, it looks like there is something wrong with your FSPS installation, or it is a very old version.

If you want to do a clean install of FSPS, you can do the following

cd ~
git clone https://github.com/cconroy20/fsps.git
export SPS_HOME="$HOME/fsps"
cd fsps/src
make clean
make all
./simple.exe

where the last line is to check that FSPS is properly installed - it should not result in any errors. You should also add the export SPS_HOME line to your bash_profile, as you've done before.

Then you should be able to do

cd ~
git clone https://github.com/dfm/python-fsps.git
cd python-fsps
python setup.py install

without any errors.

Hope this helps.

Nolaa commented 8 years ago

Thank you very much @bd-j . It did work, the only thing is every time i open a new terminal, I need to type export SPS_HOME="$HOME/fsps" before running python.

bd-j commented 8 years ago

glad that worked, you might have to add the export SPS_HOME="$HOME/fsps" to .bashrc instead of .bash_profile to have it set all the time.

Nolaa commented 8 years ago

Actually, I did this before. What I just figured out is that I needed to change my default login shell to bash instead of typing bash ( to change the shell ) and then export SPS_HOME="$HOME/fsps" in .bashrc every time I open a new terminal. Now it is running!

dr-guangtou commented 8 years ago

Hi, Any updates on the numpy 1.10.1 build?

I blindly updated numpy to 1.10.1 too, and python-fsps failed the installation....Do I need to go back to Numpy 1.9 for now?

bd-j commented 8 years ago

I haven't had time to build the numpy development version from source to make the check and write up an issue for numpy if it doesn't work. For now yes, v1.9.3 should work if you can get back to it.

bd-j commented 8 years ago

see #49, this appears to be solved in numpy v1.11

bd-j commented 8 years ago

It looks like numpy have backported the f2py fixes from 1.11 to at least 1.10.4, such that python-fsps succesfully compiles using the latest macports numpy version (which is 1.10.4). @nell-byler hope this helps.

bd-j commented 7 years ago

Closing as the problems with numpy are gone in recent numpy versions.