Closed avivajpeyi closed 1 year ago
115/~3K analyses had a theano error that looks like:
planet_transit_model, params = build_planet_transit_model(tic_entry) model_varnames = get_untransformed_varnames(planet_transit_model) test_model(planet_transit_model) --------------------------------------------------------------------------- ModuleNotFoundError Traceback (most recent call last) <ipython-input-1-797d677cee95> in <module> ----> 1 planet_transit_model, params = build_planet_transit_model(tic_entry) 2 model_varnames = get_untransformed_varnames(planet_transit_model) 3 test_model(planet_transit_model) <ipython-input-1-44cb72db158f> in build_planet_transit_model(tic_entry) 102 upper=planet.tmax + planet.duration_max, 103 ) --> 104 tmax_prior = tmax_norm( 105 name=f"{TIME_END}_{planet.index}", 106 mu=planet.tmax, /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/pymc3/distributions/bound.py in __call__(self, name, *args, **kwargs) 293 transform = kwargs.pop("transform", "infer") 294 if issubclass(self.distribution, Continuous): --> 295 return _ContinuousBounded( 296 name, self.distribution, self.lower, self.upper, transform, *args, **kwargs 297 ) /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/pymc3/distributions/distribution.py in __new__(cls, name, *args, **kwargs) 120 else: 121 dist = cls.dist(*args, **kwargs) --> 122 return model.Var(name, dist, data, total_size, dims=dims) 123 124 def __getnewargs__(self): /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/pymc3/model.py in Var(self, name, dist, data, total_size, dims) 1140 else: 1141 with self: -> 1142 var = TransformedRV( 1143 name=name, 1144 distribution=dist, /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/pymc3/model.py in __init__(self, type, owner, index, name, distribution, model, transform, total_size) 2011 2012 self.transformed = model.Var( -> 2013 transformed_name, transform.apply(distribution), total_size=total_size 2014 ) 2015 /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/pymc3/distributions/transforms.py in apply(self, dist) 124 def apply(self, dist): 125 # avoid circular import --> 126 return TransformedDistribution.dist(dist, self) 127 128 def __str__(self): /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/pymc3/distributions/distribution.py in dist(cls, *args, **kwargs) 128 def dist(cls, *args, **kwargs): 129 dist = object.__new__(cls) --> 130 dist.__init__(*args, **kwargs) 131 return dist 132 /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/pymc3/distributions/transforms.py in __init__(self, dist, transform, *args, **kwargs) 148 arguments to Distribution""" 149 forward = transform.forward --> 150 testval = forward(dist.default()) 151 152 self.dist = dist /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/pymc3/distributions/transforms.py in forward(self, x) 285 def forward(self, x): 286 a, b = self.a, self.b --> 287 return tt.log(x - a) - tt.log(b - x) 288 289 def forward_val(self, x, point=None): /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/tensor/var.py in __rsub__(self, other) 199 200 def __rsub__(self, other): --> 201 return theano.tensor.basic.sub(other, self) 202 203 def __rmul__(self, other): /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/graph/op.py in __call__(self, *inputs, **kwargs) 251 252 if config.compute_test_value != "off": --> 253 compute_test_value(node) 254 255 if self.default_output is not None: /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/graph/op.py in compute_test_value(node) 124 125 # Create a thunk that performs the computation --> 126 thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=]) 127 thunk.inputs = storage_mapv] for v in node.inputs] 128 thunk.outputs = storage_mapv] for v in node.outputs] /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/graph/op.py in make_thunk(self, node, storage_map, compute_map, no_recycling, impl) 632 ) 633 try: --> 634 return self.make_c_thunk(node, storage_map, compute_map, no_recycling) 635 except (NotImplementedError, MethodNotDefined): 636 # We requested the c code, so don't catch the error. /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/graph/op.py in make_c_thunk(self, node, storage_map, compute_map, no_recycling) 598 print(f"Disabling C code for {self} due to unsupported float16") 599 raise NotImplementedError("float16") --> 600 outputs = cl.make_thunk( 601 input_storage=node_input_storage, output_storage=node_output_storage 602 ) /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/link/c/basic.py in make_thunk(self, input_storage, output_storage, storage_map) 1201 """ 1202 init_tasks, tasks = self.get_init_tasks() -> 1203 cthunk, module, in_storage, out_storage, error_storage = self.__compile__( 1204 input_storage, output_storage, storage_map 1205 ) /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/link/c/basic.py in __compile__(self, input_storage, output_storage, storage_map) 1136 input_storage = tuple(input_storage) 1137 output_storage = tuple(output_storage) -> 1138 thunk, module = self.cthunk_factory( 1139 error_storage, 1140 input_storage, /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/link/c/basic.py in cthunk_factory(self, error_storage, in_storage, out_storage, storage_map) 1632 for node in self.node_order: 1633 node.op.prepare_node(node, storage_map, None, "c") -> 1634 module = get_module_cache().module_from_key(key=key, lnk=self) 1635 1636 vars = self.inputs + self.outputs + self.orphans /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/link/c/cmodule.py in module_from_key(self, key, lnk) 1155 # Is the source code already in the cache? 1156 module_hash = get_module_hash(src_code, key) -> 1157 module = self._get_from_hash(module_hash, key) 1158 if module is not None: 1159 return module /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/link/c/cmodule.py in _get_from_hash(self, module_hash, key) 1055 if module_hash in self.module_hash_to_key_data: 1056 key_data = self.module_hash_to_key_datamodule_hash] -> 1057 module = self._get_from_key(None, key_data) 1058 with lock_ctx(): 1059 try: /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/link/c/cmodule.py in _get_from_key(self, key, key_data) 1050 if name is None: 1051 return None -> 1052 return self._get_module(name) 1053 1054 def _get_from_hash(self, module_hash, key): /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/link/c/cmodule.py in _get_module(self, name) 698 if name not in self.module_from_name: 699 _logger.debug(f"loading name {name}") --> 700 self.module_from_namename] = dlimport(name) 701 self.stats1] += 1 702 else: /fred/oz200/avajpeyi/envs/tess/lib/python3.8/site-packages/theano/link/c/cmodule.py in dlimport(fullpath, suffix) 292 with warnings.catch_warnings(): 293 warnings.filterwarnings("ignore", message="numpy.ndarray size changed") --> 294 rval = __import__(module_name, {}, {}, module_name]) 295 t1 = time.time() 296 import_time += t1 - t0 ModuleNotFoundError: No module named 'tmp_s9tpyf8' time: 2min 11s (started: 2023-07-20 16:35:00 +10:00)
Fixed with 121b4ce47d32b23764e287b38992abacd8c2f3c3
115/~3K analyses had a theano error that looks like: