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dgidb / dgidb-v5

Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases
https://dgidb.org
MIT License
15 stars 2 forks source link

Broken links on site #459

Closed ChrisSteel-bio closed 9 months ago

ChrisSteel-bio commented 9 months ago

I would like to download dgidb data from the site, but all of the website links are currently broken. It would be fantastic if someone could fix this.

mcannon068nw commented 9 months ago

Hello @ChrisSteel-bio! Thank you for submitting this issue.

We are currently working on diagnosing this. We hope to have a fix soon. In the meantime, the TSVs available from the download page are also available from: https://old.dgidb.org/downloads

ChrisSteel-bio commented 9 months ago

Hi @mcannon068nw thanks for your quick reply. I checked, and the tsvs from https://old.dgidb.org/downloads aren't up to date. I.e. certain genes give me hits in the new database, yet are completely absent from the tsv download from the old site. "RPS3A" as an example.

ChrisSteel-bio commented 9 months ago

Dear maintainers,

Is there any development on this issue? It is frustrating that I am unable to acquire up to date interaction .tsv data.

Many thanks, Chris

mcannon068nw commented 9 months ago

A fix for this is in progress. In the meantime, we will host TSVs containing data from the most recent release here:

dec-2023-categories.csv dec-2023-drugs.csv dec-2023-genes.csv dec-2023-interactions.csv

mcannon068nw commented 9 months ago

broken downloads data (TSVs, SQL) fixed by #462 and #463