dgomezpere / msm_tfm

Development of an application to visualize, annotate and prioritize somatic variants in cancer
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[docker%dockerfile] Error while installing R #21

Open segarmond opened 2 years ago

segarmond commented 2 years ago

=> ERROR [17/24] RUN apt install -y dirmngr gnupg apt-transport-https ca-certificates     && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9      4.1s
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 > [17/24] RUN apt install -y dirmngr gnupg apt-transport-https ca-certificates     && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9     && add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/'     && apt update && apt install -y r-base r-base-core r-recommended r-base-dev:                                                
#21 0.194                                                                                                                                                                                                 
#21 0.194 WARNING: apt does not have a stable CLI interface. Use with caution in scripts.                                                                                                                 
#21 0.194                                                                                                                                                                                                 
#21 0.219 Reading package lists...
#21 0.578 Building dependency tree...
#21 0.651 Reading state information...
#21 0.735 ca-certificates is already the newest version (20210119~20.04.2).
#21 0.735 ca-certificates set to manually installed.
#21 0.735 dirmngr is already the newest version (2.2.19-3ubuntu2.1).
#21 0.735 dirmngr set to manually installed.
#21 0.735 gnupg is already the newest version (2.2.19-3ubuntu2.1).
#21 0.735 gnupg set to manually installed.
#21 0.735 The following NEW packages will be installed:
#21 0.736   apt-transport-https
#21 0.927 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
#21 0.927 Need to get 4,680 B of archives.
#21 0.927 After this operation, 162 kB of additional disk space will be used.
#21 0.927 Get:1 http://ports.ubuntu.com/ubuntu-ports focal-updates/universe arm64 apt-transport-https all 2.0.6 [4,680 B]
#21 1.065 debconf: delaying package configuration, since apt-utils is not installed
#21 1.087 Fetched 4,680 B in 0s (24.7 kB/s)
#21 1.100 Selecting previously unselected package apt-transport-https.
(Reading database ... 49530 files and directories currently installed.)
#21 1.173 Preparing to unpack .../apt-transport-https_2.0.6_all.deb ...
#21 1.175 Unpacking apt-transport-https (2.0.6) ...
#21 1.197 Setting up apt-transport-https (2.0.6) ...
#21 1.249 Warning: apt-key output should not be parsed (stdout is not a terminal)
#21 1.263 Executing: /tmp/apt-key-gpghome.98oKmhiGZk/gpg.1.sh --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
#21 1.344 gpg: key 51716619E084DAB9: public key "Michael Rutter <marutter@gmail.com>" imported
#21 1.348 gpg: Total number processed: 1
#21 1.348 gpg:               imported: 1
#21 1.747 Get:1 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease [3,622 B]
#21 1.763 Hit:2 https://deb.nodesource.com/node_14.x focal InRelease
#21 1.807 Get:3 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ Packages [47.2 kB]
#21 1.871 Hit:4 http://ports.ubuntu.com/ubuntu-ports focal InRelease
#21 1.956 Hit:5 http://ports.ubuntu.com/ubuntu-ports focal-updates InRelease
#21 2.040 Hit:6 http://ports.ubuntu.com/ubuntu-ports focal-backports InRelease
#21 2.150 Hit:7 http://ports.ubuntu.com/ubuntu-ports focal-security InRelease
#21 2.208 Fetched 50.8 kB in 1s (97.6 kB/s)
#21 2.208 Reading package lists...
#21 2.566 
#21 2.566 WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
#21 2.566 
#21 2.640 Hit:1 https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/ InRelease
#21 2.644 Hit:2 https://deb.nodesource.com/node_14.x focal InRelease
#21 2.782 Hit:3 http://ports.ubuntu.com/ubuntu-ports focal InRelease
#21 2.868 Hit:4 http://ports.ubuntu.com/ubuntu-ports focal-updates InRelease
#21 2.954 Hit:5 http://ports.ubuntu.com/ubuntu-ports focal-backports InRelease
#21 3.039 Hit:6 http://ports.ubuntu.com/ubuntu-ports focal-security InRelease
#21 3.096 Reading package lists...
#21 3.498 Building dependency tree...
#21 3.576 Reading state information...
#21 3.583 All packages are up to date.
#21 3.591 
#21 3.591 WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
#21 3.591 
#21 3.615 Reading package lists...
#21 3.975 Building dependency tree...
#21 4.050 Reading state information...
#21 4.083 Some packages could not be installed. This may mean that you have
#21 4.083 requested an impossible situation or if you are using the unstable
#21 4.083 distribution that some required packages have not yet been created
#21 4.083 or been moved out of Incoming.
#21 4.083 The following information may help to resolve the situation:
#21 4.083 
#21 4.083 The following packages have unmet dependencies:
#21 4.117  r-base : Depends: r-base-core (>= 4.1.1-1.2004.0) but 3.6.3-2 is to be installed
#21 4.117           Recommends: r-base-html but it is not going to be installed
#21 4.117  r-base-dev : Depends: r-base-core (>= 4.1.1-1.2004.0) but 3.6.3-2 is to be installed
#21 4.117  r-recommended : Depends: r-base-core (>= 4.1.1-1.2004.0) but 3.6.3-2 is to be installed
#21 4.126 E: Unable to correct problems, you have held broken packages.
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executor failed running [/bin/sh -c apt install -y dirmngr gnupg apt-transport-https ca-certificates     && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9     && add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/'     && apt update && apt install -y r-base r-base-core r-recommended r-base-dev]: exit code: 100